Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AYR47_RS05940 Genome accession   NZ_CP014546
Coordinates   1243335..1244831 (+) Length   498 a.a.
NCBI ID   WP_061434581.1    Uniprot ID   A0A127HTS4
Organism   Pseudomonas azotoformans strain S4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1238335..1249831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR47_RS05910 (AYR47_05910) xerC 1238461..1239360 (+) 900 WP_061434577.1 tyrosine recombinase XerC -
  AYR47_RS05915 (AYR47_05915) - 1239357..1240052 (+) 696 WP_061434579.1 HAD family hydrolase -
  AYR47_RS05920 (AYR47_05920) sutA 1240110..1240436 (-) 327 WP_016975879.1 transcriptional regulator SutA -
  AYR47_RS32490 - 1240539..1240613 (-) 75 Protein_1189 YjbQ family protein -
  AYR47_RS05925 (AYR47_05925) - 1240825..1242162 (-) 1338 WP_033897495.1 ammonium transporter -
  AYR47_RS05930 (AYR47_05930) glnK 1242197..1242535 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  AYR47_RS05935 (AYR47_05935) - 1242958..1243218 (+) 261 WP_033897494.1 accessory factor UbiK family protein -
  AYR47_RS05940 (AYR47_05940) comM 1243335..1244831 (+) 1497 WP_061434581.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AYR47_RS33310 - 1244835..1244972 (-) 138 WP_420492052.1 hypothetical protein -
  AYR47_RS33315 - 1244929..1245696 (-) 768 WP_420492057.1 methyl-accepting chemotaxis protein -
  AYR47_RS33320 - 1245739..1246812 (-) 1074 Protein_1196 Cache 3/Cache 2 fusion domain-containing protein -
  AYR47_RS05950 (AYR47_05950) - 1246990..1247910 (-) 921 WP_061434582.1 LysR substrate-binding domain-containing protein -
  AYR47_RS05955 (AYR47_05955) - 1248060..1249472 (+) 1413 WP_033901961.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53472.75 Da        Isoelectric Point: 8.0920

>NTDB_id=172475 AYR47_RS05940 WP_061434581.1 1243335..1244831(+) (comM) [Pseudomonas azotoformans strain S4]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHQPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLMDRIDLHLTVARETTALNPAQQA
GDNTATASAEVAEARERQLRRQGCANAFLDLPGLRKHCTLAKVDEGWLETACERLTLSLRAAHRLLKVARTLADLEQVND
ITREHLKEALQYRPASIT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=172475 AYR47_RS05940 WP_061434581.1 1243335..1244831(+) (comM) [Pseudomonas azotoformans strain S4]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAAATTGGCGTCGAAGCCCCTGCCGTCACCGTCGAAGTGCATATGGCCAA
TGGTCTGCCGTCCCTGACGCTGGTGGGTTTGCCTGAAACGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCC
TCAATTCCGCCCTGCAATACCCTGCCCGCCGCATCACCCTGAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATTGCCCTGGGAATCCTGGCGGCCAGCGTGCAGGTGCCGGCGTTGATGCTCGACGACGTGGAATGCCT
CGGGGAACTGGCACTGTCCGGCGAAGTGCGCGCAGTGAAAGGCGTATTGCCAGCAGCATTGGCGGCGCGCAAGGCCGGGC
GCACTGTGATAGTGCCACGGGCGAATGCGGAAGAAGCCTGCCTGGCATCGGGATTGAAAGTGATCGCCGTGGACCACCTG
CTTCAGGTGGTGGCGCACCTGAACGGGCATCAGCCAATCGAGCCCTACAAGTCCGACGGTTTGCTGTACCTGAACAAGCC
TTACCCGGACTTGAGCGAAGTACAGGGCCAGCTCGCCGCCAAGCGCGCATTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGTTCAGCGGCCCGCCCGGCACCGGCAAGACATTGCTCGCCAGTCGCCTGCCAGGTTTGCTGCCACCGCTGAGTGAG
CAGGAGGCCTTGGAGGTGGCGGCGATTCAGTCGGTGGTCAGCCTGGCGCCGCTGAGTCATTGGCCGCATCGGCCGTTTCG
CCAGCCGCATCATTCGGCATCAGGTCCTGCATTGGTGGGTGGCGGCTCGAAACCACAGCCCGGCGAAATCACTCTCGCCC
ATCACGGCGTCTTGTTCCTGGATGAATTGCCGGAGTTCGACCGCAAGGTACTGGAGGTGCTGCGCGAACCACTGGAGTCA
GGACACATCGTGATTTCCCGCGCCCGTGACAGGGTGAGCTTCCCAGCACGTTTTCAACTGGTGGCCGCCATGAACCCCTG
CCCGTGTGGTTATTTGGGCGAACCCAGCGGGCGCTGTCGCTGTACACCGGAGCAGATCCAGCGCTATCGCAACAAGCTGT
CCGGACCGTTGATGGACCGGATCGACCTGCACCTGACCGTCGCGCGGGAAACCACGGCATTGAACCCAGCCCAACAGGCT
GGCGATAACACCGCGACGGCCTCGGCCGAGGTAGCCGAGGCTCGCGAGCGCCAGTTACGGCGTCAGGGTTGTGCGAATGC
CTTTCTGGACCTGCCTGGGCTGCGCAAGCACTGCACGCTAGCGAAGGTCGATGAGGGCTGGCTGGAAACCGCTTGCGAGC
GGCTGACCCTGTCCCTGCGCGCCGCCCATCGCCTGCTCAAGGTGGCGCGCACCTTGGCGGACCTAGAACAGGTGAATGAC
ATCACCCGTGAGCATCTGAAGGAGGCCCTGCAATATCGCCCGGCCTCCATCACCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127HTS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.96

99.398

0.556
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Glaesserella parasuis strain SC1401

55

100

0.552
  comM Haemophilus influenzae Rd KW20

54.4

100

0.546
  comM Legionella pneumophila str. Paris

50.605

99.598

0.504
  comM Legionella pneumophila strain ERS1305867

50.605

99.598

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.726

100

0.462

Multiple sequence alignment