Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BAMY_RS13145 Genome accession   NZ_CP017953
Coordinates   2664418..2665422 (-) Length   334 a.a.
NCBI ID   WP_003152685.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2659418..2670422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS13115 (BAMY_12835) - 2660446..2661102 (-) 657 WP_003152699.1 DUF421 domain-containing protein -
  BAMY_RS13120 (BAMY_12840) - 2661269..2661655 (+) 387 WP_003152697.1 TIGR04086 family membrane protein -
  BAMY_RS13125 (BAMY_12845) yajC 2661707..2661967 (-) 261 WP_003152695.1 preprotein translocase subunit YajC -
  BAMY_RS13130 (BAMY_12850) tgt 2661998..2663143 (-) 1146 WP_014305500.1 tRNA guanosine(34) transglycosylase Tgt -
  BAMY_RS13135 (BAMY_12855) queA 2663171..2664199 (-) 1029 WP_025853086.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BAMY_RS13140 (BAMY_12860) - 2664225..2664425 (-) 201 WP_003152687.1 DUF2905 domain-containing protein -
  BAMY_RS13145 (BAMY_12865) ruvB 2664418..2665422 (-) 1005 WP_003152685.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BAMY_RS13150 (BAMY_12870) ruvA 2665433..2666038 (-) 606 WP_003152683.1 Holliday junction branch migration protein RuvA Machinery gene
  BAMY_RS13155 (BAMY_12875) - 2666173..2666682 (-) 510 WP_012118093.1 intercompartmental signaling factor BofC -
  BAMY_RS20665 - 2666814..2666933 (-) 120 WP_024085651.1 hypothetical protein -
  BAMY_RS13165 (BAMY_12885) - 2667067..2667660 (-) 594 WP_003152677.1 YhcN/YlaJ family sporulation lipoprotein -
  BAMY_RS13170 (BAMY_12890) safA 2667808..2669007 (-) 1200 WP_025853094.1 SafA/ExsA family spore coat assembly protein -
  BAMY_RS13175 (BAMY_12895) nadA 2669134..2670237 (-) 1104 WP_024085652.1 quinolinate synthase NadA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37225.52 Da        Isoelectric Point: 4.7767

>NTDB_id=172163 BAMY_RS13145 WP_003152685.1 2664418..2665422(-) (ruvB) [Bacillus amyloliquefaciens strain Y14]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=172163 BAMY_RS13145 WP_003152685.1 2664418..2665422(-) (ruvB) [Bacillus amyloliquefaciens strain Y14]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACACTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGGGTGGAG
ATGCGGACGACGTCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATTGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGTCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCGACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAGAAGCTCCGGCTCTGGAGATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGGGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGAGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTCCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

91.916

100

0.919
  ruvB Streptococcus pneumoniae TIGR4

60.736

97.605

0.593
  ruvB Streptococcus pneumoniae R6

60.736

97.605

0.593
  ruvB Streptococcus pneumoniae D39

60.736

97.605

0.593
  ruvB Synechocystis sp. PCC 6803

58.359

98.503

0.575
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518