NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	BAMY_RS13150	Genome accession	NZ_CP017953
Coordinates	2665433..2666038 (-)	Length	201 a.a.
NCBI ID	WP_003152683.1	Uniprot ID	A7Z769
Organism	Bacillus amyloliquefaciens strain Y14
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2660433..2671038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY_RS13115 (BAMY_12835)	-	2660446..2661102 (-)	657	WP_003152699.1	DUF421 domain-containing protein	-
BAMY_RS13120 (BAMY_12840)	-	2661269..2661655 (+)	387	WP_003152697.1	TIGR04086 family membrane protein	-
BAMY_RS13125 (BAMY_12845)	yajC	2661707..2661967 (-)	261	WP_003152695.1	preprotein translocase subunit YajC	-
BAMY_RS13130 (BAMY_12850)	tgt	2661998..2663143 (-)	1146	WP_014305500.1	tRNA guanosine(34) transglycosylase Tgt	-
BAMY_RS13135 (BAMY_12855)	queA	2663171..2664199 (-)	1029	WP_025853086.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
BAMY_RS13140 (BAMY_12860)	-	2664225..2664425 (-)	201	WP_003152687.1	DUF2905 domain-containing protein	-
BAMY_RS13145 (BAMY_12865)	ruvB	2664418..2665422 (-)	1005	WP_003152685.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BAMY_RS13150 (BAMY_12870)	ruvA	2665433..2666038 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
BAMY_RS13155 (BAMY_12875)	-	2666173..2666682 (-)	510	WP_012118093.1	intercompartmental signaling factor BofC	-
BAMY_RS20665	-	2666814..2666933 (-)	120	WP_024085651.1	hypothetical protein	-
BAMY_RS13165 (BAMY_12885)	-	2667067..2667660 (-)	594	WP_003152677.1	YhcN/YlaJ family sporulation lipoprotein	-
BAMY_RS13170 (BAMY_12890)	safA	2667808..2669007 (-)	1200	WP_025853094.1	SafA/ExsA family spore coat assembly protein	-
BAMY_RS13175 (BAMY_12895)	nadA	2669134..2670237 (-)	1104	WP_024085652.1	quinolinate synthase NadA	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22414.85 Da Isoelectric Point: 5.1597

                                >NTDB_id=172164 BAMY_RS13150 WP_003152683.1 2665433..2666038(-) (ruvA) [Bacillus amyloliquefaciens strain Y14]

MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL

EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=172164 BAMY_RS13150 WP_003152683.1 2665433..2666038(-) (ruvA) [Bacillus amyloliquefaciens strain Y14]

GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA

GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG

CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCG

AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGACCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT

GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC

CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT

GAAGCGCTTAGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACAGCGCTCTC

AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z769

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408

Detailed information NTG0172164