Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AX768_RS00440 Genome accession   NZ_CP014505
Coordinates   88377..89954 (-) Length   525 a.a.
NCBI ID   WP_061998318.1    Uniprot ID   -
Organism   Burkholderia sp. PAMC 28687     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 83377..94954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AX768_RS00425 (AX768_00425) - 85321..86661 (+) 1341 WP_061998315.1 sigma-54 dependent transcriptional regulator -
  AX768_RS00430 (AX768_00430) - 86731..87267 (-) 537 WP_061998316.1 TlpA disulfide reductase family protein -
  AX768_RS00435 (AX768_00435) - 87476..87997 (+) 522 WP_061998317.1 hypothetical protein -
  AX768_RS00440 (AX768_00440) comM 88377..89954 (-) 1578 WP_061998318.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AX768_RS00445 (AX768_00445) - 90070..90336 (-) 267 WP_062000658.1 accessory factor UbiK family protein -
  AX768_RS00450 (AX768_00450) - 90813..91151 (+) 339 WP_031364354.1 P-II family nitrogen regulator -
  AX768_RS00455 (AX768_00455) - 91186..92673 (+) 1488 WP_061998319.1 ammonium transporter -
  AX768_RS00460 (AX768_00460) gshA 92963..94252 (+) 1290 WP_056358120.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 55977.41 Da        Isoelectric Point: 8.3485

>NTDB_id=171998 AX768_RS00440 WP_061998318.1 88377..89954(-) (comM) [Burkholderia sp. PAMC 28687]
MSLAVVRSRAPAPGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPVEALLHREFAGELSLTGSIRPMRGAFAMACGAARQYAGVVAMERGFVRDTDVRMPEIYLPAAS
ASEAALVPGVEVFGAPDLPTLCALLCGSENGRLTPVRAATLGSRLDRRPPLPDLVDVIGHPGARRALEVAAAGGHHLLMV
GPPGAGKSMLAARLPSLLPPMTDEEALSSAAILSASMLGFSPAQWRQRPFRAPHHSSSSVALVGGRNPPQPGEITLAHLG
VLFLDELPEFDRKVLETLREPLEAGRITISRAAHQADFPAACQLVAAMNPCPCGWRGDPNGRCRCTPEIAARYLRKLSGP
LLDRIDIQIELPALSPAELSARSGSLGETSALVARRVADARERQLQRQGKTNRELDGREVDAVCRPDAAGEALLREAGER
FGWSARAYYRVLKVARSIADLAAANSPTAGHLAEAIQYRRVFAAV

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=171998 AX768_RS00440 WP_061998318.1 88377..89954(-) (comM) [Burkholderia sp. PAMC 28687]
ATGTCGCTTGCCGTGGTGCGTAGCCGCGCGCCCGCCCCTGGGCGCGCGCCCGAGGTGACCGTCGAGGTCCATCTCGCCAA
TGGATTACCTTCGTTTTCAATCGTCGGCCTGCCTGATCTTGAAGTCCGCGAAAGCCGCGAGCGCGTTCGCGCCGCCCTTC
AGAATTGCGGCTTCGAATTTCCCGTTCGCCGGATCACCGTCAACCTTGCCCCTGCCGATCTGCCGAAAGAAAGCGGCCGG
TTCGACTTGCCTATTGCATTGGGCATCCTTGCAGCGAGCGGTCAGATTCCCGTCGAGGCGTTGTTGCATCGTGAGTTTGC
GGGCGAGTTGTCGCTGACCGGTTCCATCCGGCCAATGCGCGGCGCCTTTGCGATGGCGTGCGGCGCAGCGCGGCAATATG
CGGGCGTCGTTGCAATGGAACGTGGGTTCGTGCGGGACACCGACGTGCGCATGCCTGAGATTTATCTGCCGGCCGCGAGT
GCATCGGAAGCCGCGCTCGTGCCAGGTGTCGAAGTATTTGGTGCGCCCGATCTGCCCACTTTGTGTGCACTTCTTTGCGG
CTCGGAAAACGGCCGCCTCACGCCCGTCCGTGCCGCAACGCTCGGCTCCCGGCTAGACCGGCGCCCACCCTTGCCCGATC
TCGTCGATGTCATCGGCCATCCCGGCGCACGGCGTGCACTGGAGGTCGCGGCGGCCGGCGGACATCATCTCTTGATGGTC
GGACCGCCGGGCGCAGGCAAATCGATGCTCGCCGCGCGTTTGCCCAGCCTTCTCCCACCCATGACAGACGAAGAAGCCCT
GTCCTCTGCGGCGATCCTTTCCGCGAGCATGCTTGGATTCTCCCCGGCTCAGTGGCGCCAGCGGCCGTTCCGGGCACCCC
ATCATTCATCGAGTTCGGTGGCGCTTGTCGGCGGGCGCAATCCACCACAACCCGGCGAAATCACCTTGGCGCACCTGGGC
GTGCTGTTCCTCGACGAGCTGCCGGAGTTCGACCGGAAAGTGCTCGAAACGCTGCGCGAACCGCTGGAAGCCGGCCGGAT
CACCATTTCACGCGCCGCGCATCAGGCCGACTTCCCGGCTGCGTGTCAATTGGTCGCAGCCATGAATCCGTGCCCGTGCG
GCTGGCGCGGCGATCCGAACGGCCGATGCCGCTGCACACCCGAGATCGCCGCTCGTTATCTGCGCAAACTTTCAGGACCA
CTGCTCGACCGCATCGATATCCAGATCGAACTGCCCGCATTGTCGCCGGCGGAATTATCGGCGAGGAGTGGGTCTCTGGG
TGAGACAAGCGCACTCGTGGCGCGCCGTGTAGCCGATGCACGTGAGCGCCAGCTTCAGCGCCAAGGCAAGACAAATCGGG
AACTCGATGGCCGGGAAGTCGACGCGGTCTGCCGCCCGGACGCGGCCGGCGAAGCCTTGCTGCGCGAAGCGGGTGAGCGC
TTCGGGTGGTCGGCGCGAGCGTATTACCGTGTGCTCAAAGTGGCGCGCTCGATTGCGGATCTGGCCGCCGCCAACTCACC
CACGGCGGGGCATCTGGCTGAGGCGATCCAGTATCGGCGGGTTTTCGCCGCGGTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-519)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-418)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.769

99.048

0.503
  comM Vibrio campbellii strain DS40M4

48.56

99.238

0.482
  comM Haemophilus influenzae Rd KW20

47.692

99.048

0.472
  comM Glaesserella parasuis strain SC1401

47.126

99.429

0.469
  comM Legionella pneumophila str. Paris

46.139

100

0.467
  comM Legionella pneumophila strain ERS1305867

46.139

100

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.314

97.143

0.43

Multiple sequence alignment