Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BLD37_RS02630 Genome accession   NZ_CP017868
Coordinates   491914..492924 (-) Length   336 a.a.
NCBI ID   WP_002806499.1    Uniprot ID   -
Organism   Campylobacter coli strain MG1116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 486914..497924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD37_RS02615 (BLD37_02615) glmS 487492..489288 (+) 1797 WP_002787787.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  BLD37_RS02620 (BLD37_02620) fumC 489423..490814 (+) 1392 WP_038852497.1 class II fumarate hydratase -
  BLD37_RS02625 (BLD37_02625) - 490861..491904 (-) 1044 WP_002777797.1 AI-2E family transporter -
  BLD37_RS02630 (BLD37_02630) ruvB 491914..492924 (-) 1011 WP_002806499.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BLD37_RS02635 (BLD37_02635) - 493016..493426 (+) 411 WP_002783915.1 hypothetical protein -
  BLD37_RS02645 (BLD37_02645) - 493990..496269 (+) 2280 WP_052780376.1 autotransporter outer membrane beta-barrel domain-containing protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37585.01 Da        Isoelectric Point: 4.7834

>NTDB_id=171832 BLD37_RS02630 WP_002806499.1 491914..492924(-) (ruvB) [Campylobacter coli strain MG1116]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQENIKKNLNVFISAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETIT
KERAKEALNSLGVNELGFDAMDLRYLELLTEAKRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
FSVLKLNYEQTLFDEN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=171832 BLD37_RS02630 WP_002806499.1 491914..492924(-) (ruvB) [Campylobacter coli strain MG1116]
ATGGACAGAATAGTAGAAATAGAAAAATATTCTTTTGACGAAACTTATGAAACTTCTCTGCGTCCTTCAAATTTCGATGG
CTACATAGGACAAGAAAACATTAAAAAAAATTTAAATGTTTTTATTAGCGCTGCAAAAAAAAGAAATGAATGCTTAGACC
ATATACTTTTTAGTGGGCCTGCAGGACTTGGCAAAACTACATTAGCTAATATTATTTCTTATGAGATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCAGCCATTTTAACCAATTTAAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGCCCTGCTATCGAAGAAGTACTTTACCCTGCGATGGAAGATTATCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACTCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGAATGCAATTTAGACTTGAATTTTATAAAGATGAAGAGCTTGC
TATCATACTTCAAAAAGCTGCACTAAAGCTCAATAAAAGCTGTGAAAATGAAGCTGCACTTGAGATTGCCAAAAGAAGTC
GCTCTACCCCTAGAATCGCACTTAGACTTTTAAAAAGAGTGAGAGATTTTGCAGATGTAAATGACGAAGAAACGATCACC
AAAGAAAGGGCTAAAGAAGCATTAAATTCTTTAGGTGTCAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTAGA
GCTTTTAACAGAGGCTAAAAGAAAGCCTATAGGACTTTCTAGTATAGCGGCAGCTTTGAGTGAAGATGAAAATACTATTG
AAGATGTAATCGAACCTTATTTGCTTGCAAATGGCTACATAGAACGCACTGCCAAAGGTCGTATAGCAAGTACAAAAAGT
TTTAGTGTACTTAAGCTTAATTACGAACAAACTTTATTTGATGAAAATTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.162

99.405

0.688
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.067

97.024

0.515
  ruvB Streptococcus pneumoniae TIGR4

48.036

98.512

0.473
  ruvB Streptococcus pneumoniae R6

48.036

98.512

0.473
  ruvB Streptococcus pneumoniae D39

48.036

98.512

0.473
  ruvB Synechocystis sp. PCC 6803

50.159

93.75

0.47

Multiple sequence alignment