Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AYJ52_RS03260 Genome accession   NZ_CP014477
Coordinates   694674..695315 (-) Length   213 a.a.
NCBI ID   WP_017387055.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP_882     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 689674..700315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ52_RS03240 (AYJ52_03240) aroK 690578..691147 (-) 570 WP_002116987.1 shikimate kinase AroK -
  AYJ52_RS03245 (AYJ52_03245) pilQ 691159..693324 (-) 2166 WP_017387053.1 type IV pilus secretin PilQ Machinery gene
  AYJ52_RS03250 (AYJ52_03250) pilP 693387..693914 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  AYJ52_RS03255 (AYJ52_03255) pilO 693925..694677 (-) 753 WP_017387054.1 type 4a pilus biogenesis protein PilO Machinery gene
  AYJ52_RS03260 (AYJ52_03260) pilN 694674..695315 (-) 642 WP_017387055.1 PilN domain-containing protein Machinery gene
  AYJ52_RS03265 (AYJ52_03265) pilM 695315..696373 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  AYJ52_RS03270 (AYJ52_03270) ponA 696535..699096 (+) 2562 WP_017387056.1 penicillin-binding protein PBP1a -
  AYJ52_RS03275 (AYJ52_03275) rrmA 699151..699975 (-) 825 WP_079381022.1 putative RNA methyltransferase -
  AYJ52_RS03280 (AYJ52_03280) - 699978..700310 (-) 333 WP_002116981.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23893.30 Da        Isoelectric Point: 5.4186

>NTDB_id=171833 AYJ52_RS03260 WP_017387055.1 694674..695315(-) (pilN) [Acinetobacter pittii strain AP_882]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRSGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=171833 AYJ52_RS03260 WP_017387055.1 694674..695315(-) (pilN) [Acinetobacter pittii strain AP_882]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAACGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAAGCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681

Multiple sequence alignment