Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AYJ52_RS03130 Genome accession   NZ_CP014477
Coordinates   665725..666534 (-) Length   269 a.a.
NCBI ID   WP_005078460.1    Uniprot ID   A0A009I3R3
Organism   Acinetobacter pittii strain AP_882     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 660725..671534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ52_RS03115 (AYJ52_03115) pilE 660944..661369 (-) 426 WP_017387037.1 type IV pilin protein Machinery gene
  AYJ52_RS03120 (AYJ52_03120) pilY2 661366..661848 (-) 483 WP_017387038.1 type IV pilin protein Machinery gene
  AYJ52_RS03125 (AYJ52_03125) pilY1 661859..665713 (-) 3855 WP_017403269.1 PilC/PilY family type IV pilus protein Machinery gene
  AYJ52_RS03130 (AYJ52_03130) pilX 665725..666534 (-) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AYJ52_RS03135 (AYJ52_03135) pilW 666531..667532 (-) 1002 WP_017387040.1 PilW family protein Machinery gene
  AYJ52_RS03140 (AYJ52_03140) pilV 667532..668092 (-) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  AYJ52_RS03145 (AYJ52_03145) fimU 668086..668559 (-) 474 WP_017387042.1 pilus assembly FimT family protein Machinery gene
  AYJ52_RS03150 (AYJ52_03150) ispH 668729..669679 (-) 951 WP_017387043.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AYJ52_RS03155 (AYJ52_03155) gmk 669802..670431 (+) 630 WP_002116973.1 guanylate kinase -
  AYJ52_RS03160 (AYJ52_03160) rpoZ 670504..670782 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  AYJ52_RS20590 - 670821..670976 (+) 156 Protein_608 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28532.34 Da        Isoelectric Point: 7.2645

>NTDB_id=171825 AYJ52_RS03130 WP_005078460.1 665725..666534(-) (pilX) [Acinetobacter pittii strain AP_882]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=171825 AYJ52_RS03130 WP_005078460.1 665725..666534(-) (pilX) [Acinetobacter pittii strain AP_882]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTCGTTGAAGATGGCGGCGTAGCGG
GTTTCTGCGATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTCACCCAAGTTGCTGTAAGTGTTCCAACAGAC
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACAGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I3R3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.074

100

0.911

Multiple sequence alignment