Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AXX16_RS03505 Genome accession   NZ_CP014474
Coordinates   766696..768216 (-) Length   506 a.a.
NCBI ID   WP_061321874.1    Uniprot ID   -
Organism   Serratia rubidaea strain 1122     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 761696..773216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXX16_RS03495 (AXX16_0706) hdfR 765383..766210 (-) 828 WP_054307721.1 HTH-type transcriptional regulator HdfR -
  AXX16_RS03500 (AXX16_0707) - 766331..766669 (+) 339 WP_054307720.1 DUF413 domain-containing protein -
  AXX16_RS03505 (AXX16_0708) comM 766696..768216 (-) 1521 WP_061321874.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AXX16_RS03510 (AXX16_0709) - 768549..769781 (+) 1233 WP_054307718.1 MFS transporter -
  AXX16_RS22715 ilvL 769915..770013 (+) 99 WP_015962288.1 ilv operon leader peptide -
  AXX16_RS03515 (AXX16_0710) ilvG 770156..771802 (+) 1647 WP_061321875.1 acetolactate synthase 2 catalytic subunit -
  AXX16_RS03520 ilvM 771799..772065 (+) 267 WP_015962286.1 acetolactate synthase 2 small subunit -
  AXX16_RS03525 (AXX16_0712) - 772086..773012 (+) 927 WP_015962285.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54469.89 Da        Isoelectric Point: 8.5181

>NTDB_id=171772 AXX16_RS03505 WP_061321874.1 766696..768216(-) (comM) [Serratia rubidaea strain 1122]
MSLAVIFTRATLGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALLNNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIPADRLAEHEFLGELALSGALRAVSGAIPAAMAAQQDGRGLILPAENEGEVGLLPKEGTRVATHL
LAVCAFLLGQGELSLAQPPAAPPNANRGDLQDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLTDQ
EALESVAVASLQHQPAGRLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRTLDALREPLES
GEIVISRASAKICFPARIQLIAAMNPSPTGHYQGMHNRTPPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGTLSKQQEPG
ESSQQVRQRVIAARELQLQRAGKINAILGKREVDRDCPLCDADAHYLETTLLKLGLSVRAWHRILKVARTLADLAGEKHI
ARHHLSEALGYRRMERLLIQLHRSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=171772 AXX16_RS03505 WP_061321874.1 766696..768216(-) (comM) [Serratia rubidaea strain 1122]
ATGTCATTGGCGGTTATTTTCACTCGGGCTACGCTGGGCGTTCAGGCGCCGTCGGTGACGGTCGAAGTCCATATCAGCAA
CGGGTTGCCCGGATTAACGCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAGGCGCGCGATCGGGTACGCAGCGCACTGC
TCAACAACGGTTTTACCTTTCCCGCGAAACGCATCACCGTCAACCTGGCGCCGGCGGACCTGCCCAAGGAGGGCGGCCGG
TACGATCTGCCGATCGCTCTGGCGATCCTCGCCGCTTCGGAGCAGATCCCAGCAGATCGGCTGGCCGAACACGAATTTCT
CGGCGAACTGGCGCTGTCCGGTGCATTGCGCGCCGTCAGCGGCGCCATCCCCGCAGCAATGGCGGCGCAGCAGGATGGCA
GAGGGCTGATCCTGCCTGCAGAAAATGAAGGGGAGGTCGGCCTGCTGCCGAAAGAGGGAACGCGGGTTGCAACGCACCTG
TTGGCCGTCTGCGCCTTTCTGCTTGGCCAGGGTGAACTGTCGCTTGCCCAGCCTCCCGCCGCGCCGCCTAACGCCAACCG
GGGGGACCTGCAGGATATTATCGGCCAGGAACAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCGGTCACAATCTGC
TGCTGCTCGGCCCGCCAGGCACCGGCAAAACCATGCTGGCAAGCCGCCTGCCGGGATTATTGCCGCCGCTAACCGACCAG
GAGGCGCTGGAGAGCGTTGCAGTCGCCAGCCTGCAGCATCAGCCCGCCGGCAGGCTGCCGTGGCGCCAGCGGCCATTCAG
GGCGCCGCACCACAGTGCATCCATGGCGGCACTGGTCGGCGGCGGCTCTCTGCCGCGCCCGGGGGAAATATCCATGGCGC
ACAACGGCGTGCTGTTCCTTGATGAACTCCCCGAATTTGAACGGCGCACGCTGGACGCCCTGCGCGAGCCTTTGGAATCC
GGGGAAATTGTCATTTCGCGCGCCAGTGCCAAAATCTGCTTCCCGGCGCGAATTCAGCTGATCGCCGCCATGAATCCCAG
CCCAACCGGCCACTATCAGGGCATGCATAACCGAACCCCGCCACAGCAGGTTCTGCGCTATCTGGGCCGGCTTTCCGGGC
CATTTCTCGACCGGTTCGATTTATCGATCGAAGTCCCCTTGCTGCCGCCCGGTACGCTCAGCAAACAGCAAGAGCCGGGA
GAAAGCAGCCAGCAGGTGCGCCAGCGCGTAATCGCGGCGCGGGAACTGCAATTGCAGCGCGCCGGAAAAATTAATGCCAT
TCTCGGCAAACGCGAGGTGGATCGAGATTGCCCATTGTGCGATGCCGACGCCCACTATCTGGAAACAACCTTGCTTAAGC
TGGGATTATCCGTACGCGCCTGGCATCGCATCCTCAAGGTAGCACGCACGCTGGCGGATTTAGCGGGAGAAAAACATATT
GCCCGCCACCATCTCAGCGAAGCATTAGGCTACCGTCGGATGGAACGCCTGCTGATCCAGCTACATCGCAGTCTGGAATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

100

0.658
  comM Vibrio cholerae strain A1552

65.737

99.209

0.652
  comM Glaesserella parasuis strain SC1401

64.694

100

0.648
  comM Vibrio campbellii strain DS40M4

64.94

99.209

0.644
  comM Legionella pneumophila str. Paris

49.605

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.605

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.902

100

0.453

Multiple sequence alignment