Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AYM39_RS20190 Genome accession   NZ_CP014360
Coordinates   4548137..4549645 (+) Length   502 a.a.
NCBI ID   WP_064023077.1    Uniprot ID   A0A172UDQ6
Organism   Methylomonas sp. DH-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4543137..4554645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM39_RS20170 (AYM39_20160) - 4543854..4545596 (+) 1743 WP_064023074.1 alpha/beta fold hydrolase -
  AYM39_RS20175 (AYM39_20165) - 4545608..4547218 (+) 1611 WP_064023075.1 hypothetical protein -
  AYM39_RS20180 (AYM39_20170) - 4547292..4547876 (+) 585 WP_064023076.1 MarR family winged helix-turn-helix transcriptional regulator -
  AYM39_RS20185 (AYM39_20175) - 4547882..4548133 (+) 252 WP_054758874.1 accessory factor UbiK family protein -
  AYM39_RS20190 (AYM39_20180) comM 4548137..4549645 (+) 1509 WP_064023077.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AYM39_RS20195 (AYM39_20185) - 4549650..4552007 (-) 2358 WP_064023078.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
  AYM39_RS20200 (AYM39_20190) - 4552004..4552471 (-) 468 WP_064023079.1 (2Fe-2S)-binding protein -
  AYM39_RS20205 (AYM39_20195) - 4552570..4553364 (-) 795 WP_064023080.1 XdhC family protein -
  AYM39_RS20210 (AYM39_20200) - 4553372..4553995 (-) 624 WP_331711082.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53941.13 Da        Isoelectric Point: 8.2688

>NTDB_id=170666 AYM39_RS20190 WP_064023077.1 4548137..4549645(+) (comM) [Methylomonas sp. DH-1]
MSLAVVYSRGRSGIDAPLVTVEVHVSNGLPALNMVGLPETAVKESKDRVRGAIVNSHFEFPIQRITVNLAPADLPKEGGR
FDLAIALGILAASGQIPKNALADYECIGELSLGGELRPIPGALPVAIHCRNAHRQLILPVGCVAEAALIKDAGLLPAGHL
LEVCAHLSGHKPIEPPIPNPNSATAAFNVDFADVHGQYHVKRALEIAASGQHNLLMLGPPGTGKSMLAARLPTILPELSE
QQAQETAAIASISDHGLDIQRWRQPPFRAPHHTASAAALVGGGSNPKPGEISLSHNGALFLDELPEFDRKVLEVLREPLE
TGHITISRANRQADFPARFQLIAAMNPCPCGYLGDASGRCRCTSEQVARYRARVSGPLLDRIDMHLEVPRVSLEMLRKGA
VAGEERSETIRRRVVAARQIAAARSGKPNAALTAAEVKTICKLTDTGHQLLEQAMEKFGLSHRAYHRILKLARTIADMAD
APAIEIPHLSEAIGYRKLDRNR

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=170666 AYM39_RS20190 WP_064023077.1 4548137..4549645(+) (comM) [Methylomonas sp. DH-1]
ATGTCGCTGGCCGTGGTTTACAGCCGGGGCCGGTCCGGCATCGATGCGCCGTTGGTAACGGTGGAGGTGCATGTCAGCAA
CGGTTTGCCGGCGCTGAATATGGTCGGCCTGCCGGAAACCGCGGTAAAGGAAAGCAAGGATAGGGTGCGCGGCGCCATCG
TCAATTCGCATTTCGAATTTCCGATCCAGCGCATCACGGTCAATCTGGCGCCGGCCGACTTGCCCAAGGAAGGCGGCCGT
TTCGATCTGGCGATTGCGTTGGGAATTTTGGCCGCTTCCGGCCAAATCCCGAAAAATGCGCTGGCCGACTACGAATGCAT
CGGCGAGCTGTCGCTGGGCGGCGAACTGCGGCCGATACCCGGCGCCTTGCCGGTGGCGATCCATTGCCGCAACGCCCATA
GGCAACTGATTCTGCCAGTTGGCTGCGTCGCCGAGGCGGCTTTAATCAAAGATGCCGGCCTGCTGCCGGCCGGGCATTTG
CTGGAAGTTTGCGCGCATTTGTCCGGACACAAGCCGATCGAACCGCCCATCCCGAACCCAAATAGTGCGACCGCGGCCTT
CAACGTCGACTTCGCCGACGTTCACGGCCAGTACCACGTCAAGCGGGCATTGGAAATTGCCGCCAGCGGCCAACATAATC
TATTGATGCTGGGGCCGCCCGGCACCGGCAAATCCATGCTAGCGGCGCGGCTGCCGACCATTTTGCCGGAACTGAGCGAA
CAACAGGCCCAGGAAACCGCCGCCATCGCCTCGATCAGCGACCACGGTTTGGATATCCAACGCTGGCGGCAACCGCCGTT
TCGCGCACCGCACCACACCGCTTCGGCTGCAGCCTTGGTCGGCGGCGGCAGCAATCCCAAACCGGGCGAAATCTCGCTAT
CGCATAACGGCGCGCTGTTTTTGGACGAACTGCCCGAATTCGACCGGAAGGTGCTGGAAGTTCTGCGCGAACCGCTGGAA
ACCGGCCATATCACGATCTCCCGCGCCAACCGCCAAGCCGATTTCCCGGCCCGATTCCAACTGATCGCGGCGATGAATCC
CTGCCCGTGCGGCTATCTGGGCGACGCTTCCGGCCGCTGCCGCTGCACCTCGGAGCAAGTCGCCCGCTACCGGGCGCGCG
TCTCCGGGCCGTTGTTGGATCGGATCGATATGCATCTGGAAGTACCGAGAGTGTCGTTGGAAATGTTGCGCAAAGGCGCG
GTGGCAGGCGAGGAACGCAGCGAAACCATCCGCCGCCGAGTAGTCGCGGCCCGGCAGATCGCCGCCGCCCGCAGCGGCAA
ACCGAATGCGGCGCTGACCGCCGCCGAAGTCAAAACCATATGCAAACTGACGGACACCGGCCATCAATTGCTGGAACAGG
CCATGGAGAAATTCGGCCTGTCGCACCGCGCCTACCACCGCATCCTGAAACTGGCGCGCACCATCGCCGACATGGCCGAC
GCGCCGGCCATCGAAATTCCCCACCTCAGCGAAGCAATCGGTTACCGCAAGCTCGACCGCAACCGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172UDQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.4

99.602

0.542
  comM Vibrio campbellii strain DS40M4

54.2

99.602

0.54
  comM Glaesserella parasuis strain SC1401

53.663

100

0.54
  comM Haemophilus influenzae Rd KW20

52.071

100

0.526
  comM Legionella pneumophila str. Paris

51.911

99.004

0.514
  comM Legionella pneumophila strain ERS1305867

51.911

99.004

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.898

100

0.468

Multiple sequence alignment