Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AXG89_RS07090 Genome accession   NZ_CP014306
Coordinates   1498511..1500088 (-) Length   525 a.a.
NCBI ID   WP_062168825.1    Uniprot ID   -
Organism   Burkholderia sp. PAMC 26561     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1493511..1505088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXG89_RS07075 (AXG89_07000) - 1495455..1496795 (+) 1341 WP_062168820.1 sigma-54 dependent transcriptional regulator -
  AXG89_RS07080 (AXG89_07005) - 1496865..1497401 (-) 537 WP_062168821.1 TlpA disulfide reductase family protein -
  AXG89_RS07085 (AXG89_07010) - 1497574..1498131 (+) 558 WP_236873385.1 hypothetical protein -
  AXG89_RS07090 (AXG89_07015) comM 1498511..1500088 (-) 1578 WP_062168825.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AXG89_RS07095 (AXG89_07020) - 1500204..1500470 (-) 267 WP_062170386.1 accessory factor UbiK family protein -
  AXG89_RS07100 (AXG89_07025) - 1500946..1501284 (+) 339 WP_031364354.1 P-II family nitrogen regulator -
  AXG89_RS07105 (AXG89_07030) - 1501319..1502806 (+) 1488 WP_062168827.1 ammonium transporter -
  AXG89_RS07110 (AXG89_07035) gshA 1503097..1504386 (+) 1290 WP_056358120.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 55860.18 Da        Isoelectric Point: 8.1925

>NTDB_id=170231 AXG89_RS07090 WP_062168825.1 1498511..1500088(-) (comM) [Burkholderia sp. PAMC 26561]
MSLAVVRSRAPAPGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPVEALLHREFAGELSLTGSIRPMRGAFAMACGAARQYAGVVAMEGGFVRDTDVRMPEIYLPAAS
ASEAALVPGVEVFGAPDLPTLCAHLCGSENGRLTPVRAATLGSRLDRRPPLPDLVDVIGHPGARRALEVAAAGGHHLLMV
GPPGAGKSMLAARLPSLLPPMTDEEALSSAAILSASMLGFSPAQWRQRPFRAPHHSSSSVALVGGRNPPQPGEITLAHLG
VLFLDELPEFDRKVLETLREPLEAGRITISRAAHQADFPAACQLVAAMNPCPCGWRGDPNGRCRCTPEIAARYLRKLSGP
LLDRIDIQIELPALSPAELSARSGSLGETSAVVARRVADARERQLQRQGKTNRELDGREVDAVCRPDAAGEALLREAGER
FGWSARAYYRVLKVARSIADLAAANSPTAGHLAEAIQYRRAFAAV

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=170231 AXG89_RS07090 WP_062168825.1 1498511..1500088(-) (comM) [Burkholderia sp. PAMC 26561]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTCCTGGGCGCGCGCCCGAGGTGACCGTCGAGGTTCATCTCGCCAA
TGGATTACCTTCGTTTTCAATCGTCGGCCTGCCTGATCTTGAAGTCCGCGAAAGCCGCGAGCGCGTTCGCGCCGCCCTTC
AGAATTGCGGCTTCGAATTTCCCGTTCGCCGGATCACCGTCAACCTTGCCCCTGCCGATCTGCCGAAAGAAAGCGGCCGG
TTCGACTTGCCTATTGCATTGGGCATCCTTGCAGCGAGCGGTCAGATTCCCGTCGAGGCGTTGTTGCATCGTGAGTTTGC
GGGCGAGTTGTCGCTGACCGGTTCCATCCGGCCAATGCGCGGCGCCTTTGCGATGGCGTGCGGCGCAGCGCGGCAATATG
CGGGCGTCGTTGCAATGGAAGGTGGGTTCGTGCGGGACACCGACGTGCGCATGCCTGAGATTTATCTGCCGGCCGCGAGT
GCATCGGAAGCCGCGCTCGTGCCAGGTGTCGAAGTATTTGGTGCGCCCGATCTGCCCACTTTGTGTGCACATCTTTGCGG
CTCGGAAAACGGCCGCCTCACGCCCGTCCGTGCCGCAACGCTCGGCTCCCGGCTAGACCGGCGCCCACCCTTGCCCGATC
TCGTCGATGTCATCGGCCATCCCGGCGCACGGCGTGCACTGGAAGTCGCGGCGGCCGGCGGACATCATCTCTTGATGGTC
GGACCGCCTGGCGCAGGCAAATCGATGCTCGCCGCGCGATTGCCCAGCCTTCTCCCACCCATGACAGACGAAGAAGCCCT
GTCCTCTGCGGCGATCCTTTCCGCGAGCATGCTTGGATTCTCCCCAGCTCAGTGGCGCCAGCGGCCGTTCCGGGCACCCC
ATCATTCATCGAGTTCGGTGGCGCTTGTCGGCGGTCGCAACCCGCCGCAACCCGGCGAAATCACCTTGGCGCACCTGGGC
GTGCTGTTTCTCGACGAGCTGCCGGAGTTCGACCGGAAAGTGCTCGAAACGCTGCGCGAACCGCTGGAAGCCGGCCGGAT
CACCATTTCACGCGCCGCGCATCAGGCCGACTTCCCGGCTGCGTGTCAATTGGTCGCAGCCATGAATCCGTGCCCGTGCG
GCTGGCGCGGCGATCCGAACGGCCGATGCCGCTGCACACCCGAGATCGCCGCTCGTTATCTGCGCAAACTTTCAGGACCA
CTGCTCGACCGCATCGATATCCAGATCGAGCTGCCCGCATTGTCGCCGGCGGAGTTATCGGCGAGGAGTGGGTCTCTGGG
AGAGACAAGCGCAGTCGTGGCGCGCCGTGTCGCCGATGCACGCGAGCGCCAGCTTCAGCGCCAAGGCAAGACAAATCGCG
AACTCGATGGCCGGGAAGTCGACGCGGTCTGCCGCCCGGACGCGGCCGGCGAAGCCTTGCTGCGCGAAGCGGGTGAGCGC
TTCGGATGGTCGGCGCGAGCGTATTACCGCGTGCTCAAAGTGGCGCGCTCGATTGCGGATCTGGCTGCCGCCAACTCACC
CACGGCGGGGCATCTGGCTGAGGCGATCCAGTATCGGCGGGCTTTCGCCGCGGTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-519)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.385

99.048

0.499
  comM Vibrio campbellii strain DS40M4

48.56

99.238

0.482
  comM Haemophilus influenzae Rd KW20

47.692

99.048

0.472
  comM Glaesserella parasuis strain SC1401

47.126

99.429

0.469
  comM Legionella pneumophila str. Paris

46.139

100

0.467
  comM Legionella pneumophila strain ERS1305867

46.139

100

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.314

97.143

0.43

Multiple sequence alignment