Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AXG53_RS07975 Genome accession   NZ_CP014274
Coordinates   1886645..1888156 (+) Length   503 a.a.
NCBI ID   WP_062167414.1    Uniprot ID   A0A126NM46
Organism   Stenotrophomonas sp. KCTC 12332 strain YM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1881645..1893156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXG53_RS07950 (AXG53_07950) speE 1882511..1883368 (+) 858 WP_062167407.1 polyamine aminopropyltransferase -
  AXG53_RS07955 (AXG53_07955) - 1883478..1884383 (-) 906 WP_062167409.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  AXG53_RS07960 (AXG53_07960) - 1885072..1885728 (+) 657 WP_062167410.1 RIO1 family regulatory kinase/ATPase -
  AXG53_RS07965 (AXG53_07965) - 1885881..1886219 (-) 339 WP_057628415.1 P-II family nitrogen regulator -
  AXG53_RS07970 (AXG53_07970) - 1886376..1886633 (+) 258 WP_062167412.1 accessory factor UbiK family protein -
  AXG53_RS07975 (AXG53_07975) comM 1886645..1888156 (+) 1512 WP_062167414.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AXG53_RS07980 (AXG53_07980) - 1888238..1889149 (-) 912 WP_062167416.1 LysR family transcriptional regulator -
  AXG53_RS07985 (AXG53_07985) - 1889251..1889853 (+) 603 WP_062167418.1 NAD(P)H-dependent oxidoreductase -
  AXG53_RS07990 (AXG53_07990) - 1890038..1891564 (+) 1527 WP_062167420.1 hypothetical protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53601.32 Da        Isoelectric Point: 8.0841

>NTDB_id=170141 AXG53_RS07975 WP_062167414.1 1886645..1888156(+) (comM) [Stenotrophomonas sp. KCTC 12332 strain YM1]
MSLALVHSRARAGVHAPLVQVEVHLSGGLPFTQIVGLPEAAVRESRDRVRAAILCAQFDYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRNALADYEFIGELALTGELRAVDGALPAAISAANAGRCLIVPPGNAGEAALAQRAEVKVARTL
LEVCAALAGSKQLPDAQVPATEPAILADLVDVRGQLHARRALEIAAAGGHHLLLLGSPGCGKTLLASRLPGILPEASEAE
ALETAAIASASGRGVDPSRWRQRPYRAPHHTASAVALVGGGSHPRPGEISLAHNGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSMEFPARFQLIAAMNPCPCGWAGDSSGRCRCSVESIRRYRARISGPLLDRIDLHLQVPRLAPSELRGDASA
GESSTQVRERVMQARVRQLQRAGKANAYLAQAETLRDCRLSTADEDLLEQAMERLQLSARSMHRILRVARTIADLAAKTA
IERAHLTEAIGYRQLDRGEAGDA

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=170141 AXG53_RS07975 WP_062167414.1 1886645..1888156(+) (comM) [Stenotrophomonas sp. KCTC 12332 strain YM1]
GTGAGCCTGGCGCTGGTGCACAGCCGCGCCCGTGCCGGCGTGCACGCGCCGTTGGTGCAGGTGGAAGTCCACCTGTCCGG
CGGCCTGCCCTTCACCCAGATCGTTGGCCTGCCCGAAGCCGCCGTGCGGGAATCGCGTGACCGGGTGCGTGCGGCCATTC
TCTGCGCACAGTTCGACTACCCCGCCCGCCGCATCACCATCAATCTGGCGCCGGCAGACCTGCCCAAGGAAGGCGGCCGT
TTTGATCTGCCGATCGCACTGGGCATCCTCGCCGCCAGCGGGCAGATCGACCGCAATGCGCTGGCCGATTACGAGTTCAT
CGGCGAACTGGCACTCACCGGTGAACTGCGCGCGGTGGATGGCGCCTTGCCTGCCGCCATATCGGCCGCCAACGCGGGGC
GCTGCCTGATCGTGCCGCCAGGCAATGCGGGCGAAGCCGCGCTCGCCCAGCGCGCCGAGGTCAAAGTCGCGCGCACCTTG
CTTGAAGTGTGCGCCGCACTGGCCGGCAGCAAGCAGCTGCCAGACGCACAGGTGCCTGCAACCGAGCCAGCGATACTGGC
CGACCTCGTTGATGTGCGCGGCCAGCTGCATGCGCGGCGTGCGCTGGAGATCGCAGCCGCAGGTGGCCATCATCTACTGT
TGCTGGGTTCACCCGGTTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAAGCGGAA
GCCCTGGAAACCGCTGCGATCGCCTCGGCCAGTGGCCGCGGCGTCGATCCCAGCCGCTGGCGGCAACGCCCGTATCGCGC
ACCGCACCATACCGCCAGCGCGGTCGCCCTGGTGGGTGGCGGCTCGCACCCACGGCCAGGTGAAATATCCCTGGCGCACA
ACGGTGTGCTGTTCCTGGATGAACTGCCGGAGTGGAATCGACATGCGCTGGAAGTGCTGCGCGAACCGTTGGAATCGGGC
ACGGTCACGGTATCGCGGGCGGCACGCAGCATGGAGTTTCCGGCGCGCTTCCAGTTGATTGCCGCCATGAACCCCTGCCC
CTGCGGTTGGGCCGGCGACAGCAGCGGGCGCTGCCGCTGTTCGGTGGAAAGCATCCGCCGTTATCGCGCGCGCATTTCCG
GGCCGCTGCTGGACCGCATCGATCTGCATCTGCAGGTGCCACGGCTGGCCCCGAGCGAGCTGCGCGGCGATGCCAGCGCA
GGCGAGAGCAGCACGCAGGTGCGCGAACGGGTGATGCAGGCACGTGTGCGCCAACTGCAACGTGCCGGCAAGGCCAATGC
GTATCTGGCGCAGGCCGAAACACTGCGCGATTGCCGCCTTTCCACTGCCGACGAAGACCTGCTTGAGCAGGCGATGGAAC
GCCTGCAGCTGTCGGCGCGGTCGATGCATCGCATCCTGCGGGTAGCGCGGACGATTGCCGACCTTGCCGCCAAAACGGCG
ATTGAACGGGCCCATCTGACCGAAGCGATCGGCTACCGGCAGTTGGATCGCGGCGAAGCCGGTGACGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126NM46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.175

99.801

0.561
  comM Haemophilus influenzae Rd KW20

54.96

100

0.551
  comM Glaesserella parasuis strain SC1401

54.96

100

0.551
  comM Vibrio campbellii strain DS40M4

55.311

99.205

0.549
  comM Legionella pneumophila str. Paris

50.699

99.602

0.505
  comM Legionella pneumophila strain ERS1305867

50.699

99.602

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.465

Multiple sequence alignment