Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | AXG53_RS04875 | Genome accession | NZ_CP014274 |
| Coordinates | 1136806..1137219 (-) | Length | 137 a.a. |
| NCBI ID | WP_062166721.1 | Uniprot ID | A0A126NGG3 |
| Organism | Stenotrophomonas sp. KCTC 12332 strain YM1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1131806..1142219
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXG53_RS04865 (AXG53_04865) | pilR | 1132598..1134001 (+) | 1404 | WP_062166719.1 | sigma-54 dependent transcriptional regulator | Regulator |
| AXG53_RS04870 (AXG53_04870) | pilB | 1134241..1135971 (-) | 1731 | WP_062166720.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AXG53_RS04875 (AXG53_04875) | pilA/pilAI | 1136806..1137219 (-) | 414 | WP_062166721.1 | pilin | Machinery gene |
| AXG53_RS04880 (AXG53_04880) | pilC | 1137756..1139012 (+) | 1257 | WP_062166722.1 | type II secretion system F family protein | Machinery gene |
| AXG53_RS04885 (AXG53_04885) | pilD | 1139016..1139882 (+) | 867 | WP_062166723.1 | A24 family peptidase | Machinery gene |
| AXG53_RS04890 (AXG53_04890) | coaE | 1139938..1140555 (+) | 618 | WP_062166724.1 | dephospho-CoA kinase | - |
| AXG53_RS04895 (AXG53_04895) | - | 1140718..1142058 (-) | 1341 | WP_062166725.1 | HAMP domain-containing sensor histidine kinase | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 13998.37 Da Isoelectric Point: 8.1152
>NTDB_id=170135 AXG53_RS04875 WP_062166721.1 1136806..1137219(-) (pilA/pilAI) [Stenotrophomonas sp. KCTC 12332 strain YM1]
MKKQQGFTLIELMIVVAIIAILAAIALPMYRDYVAKSQLAAALAEINPAKTALEVALQENGAYVPATPQDLGLQTAPTPR
CSAYGASATVLSCTVLGNDIVTGAVVTLTRTPATGAWACTVTGGTGLVAKHRPGGCT
MKKQQGFTLIELMIVVAIIAILAAIALPMYRDYVAKSQLAAALAEINPAKTALEVALQENGAYVPATPQDLGLQTAPTPR
CSAYGASATVLSCTVLGNDIVTGAVVTLTRTPATGAWACTVTGGTGLVAKHRPGGCT
Nucleotide
Download Length: 414 bp
>NTDB_id=170135 AXG53_RS04875 WP_062166721.1 1136806..1137219(-) (pilA/pilAI) [Stenotrophomonas sp. KCTC 12332 strain YM1]
ATGAAGAAGCAGCAGGGTTTCACGCTGATCGAACTGATGATCGTGGTTGCGATCATCGCCATTTTGGCCGCCATTGCGCT
GCCGATGTACCGTGATTATGTTGCCAAGTCGCAGCTGGCTGCTGCTCTGGCAGAAATCAATCCAGCCAAGACGGCATTGG
AAGTGGCGCTGCAGGAAAATGGCGCGTATGTCCCGGCAACCCCGCAGGACCTGGGCTTGCAGACCGCCCCGACTCCGCGT
TGCAGTGCCTATGGTGCCAGCGCCACTGTTCTTAGCTGCACCGTGCTTGGTAACGACATCGTTACCGGTGCAGTGGTGAC
GTTGACCCGTACACCTGCTACCGGCGCGTGGGCTTGCACCGTAACGGGTGGTACTGGCTTGGTTGCCAAGCACCGCCCGG
GCGGCTGCACCTGA
ATGAAGAAGCAGCAGGGTTTCACGCTGATCGAACTGATGATCGTGGTTGCGATCATCGCCATTTTGGCCGCCATTGCGCT
GCCGATGTACCGTGATTATGTTGCCAAGTCGCAGCTGGCTGCTGCTCTGGCAGAAATCAATCCAGCCAAGACGGCATTGG
AAGTGGCGCTGCAGGAAAATGGCGCGTATGTCCCGGCAACCCCGCAGGACCTGGGCTTGCAGACCGCCCCGACTCCGCGT
TGCAGTGCCTATGGTGCCAGCGCCACTGTTCTTAGCTGCACCGTGCTTGGTAACGACATCGTTACCGGTGCAGTGGTGAC
GTTGACCCGTACACCTGCTACCGGCGCGTGGGCTTGCACCGTAACGGGTGGTACTGGCTTGGTTGCCAAGCACCGCCCGG
GCGGCTGCACCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.143 |
100 |
0.482 |
| pilA | Pseudomonas aeruginosa PAK |
41.667 |
100 |
0.474 |
| pilA | Acinetobacter baumannii strain A118 |
43.056 |
100 |
0.453 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.203 |
100 |
0.445 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.446 |
100 |
0.431 |
| pilA2 | Legionella pneumophila str. Paris |
42.446 |
100 |
0.431 |
| comP | Acinetobacter baylyi ADP1 |
39.597 |
100 |
0.431 |
| pilA | Vibrio cholerae strain A1552 |
37.5 |
100 |
0.416 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.5 |
100 |
0.416 |
| pilA | Vibrio cholerae C6706 |
37.5 |
100 |
0.416 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.802 |
88.321 |
0.387 |
| pilE | Neisseria gonorrhoeae MS11 |
31.847 |
100 |
0.365 |