Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AXG53_RS04880 | Genome accession | NZ_CP014274 |
| Coordinates | 1137756..1139012 (+) | Length | 418 a.a. |
| NCBI ID | WP_062166722.1 | Uniprot ID | - |
| Organism | Stenotrophomonas sp. KCTC 12332 strain YM1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1132756..1144012
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXG53_RS04870 (AXG53_04870) | pilB | 1134241..1135971 (-) | 1731 | WP_062166720.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AXG53_RS04875 (AXG53_04875) | pilA/pilAI | 1136806..1137219 (-) | 414 | WP_062166721.1 | pilin | Machinery gene |
| AXG53_RS04880 (AXG53_04880) | pilC | 1137756..1139012 (+) | 1257 | WP_062166722.1 | type II secretion system F family protein | Machinery gene |
| AXG53_RS04885 (AXG53_04885) | pilD | 1139016..1139882 (+) | 867 | WP_062166723.1 | A24 family peptidase | Machinery gene |
| AXG53_RS04890 (AXG53_04890) | coaE | 1139938..1140555 (+) | 618 | WP_062166724.1 | dephospho-CoA kinase | - |
| AXG53_RS04895 (AXG53_04895) | - | 1140718..1142058 (-) | 1341 | WP_062166725.1 | HAMP domain-containing sensor histidine kinase | - |
| AXG53_RS04900 (AXG53_04900) | - | 1142051..1142728 (-) | 678 | WP_057629745.1 | response regulator transcription factor | - |
| AXG53_RS04905 (AXG53_04905) | rimK | 1143091..1143966 (-) | 876 | WP_062166726.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45549.82 Da Isoelectric Point: 10.1709
>NTDB_id=170136 AXG53_RS04880 WP_062166722.1 1137756..1139012(+) (pilC) [Stenotrophomonas sp. KCTC 12332 strain YM1]
MSVTRSAIKNQPVARGTSQMLPFVWEGTDKRGIKMKGEQQAKSSNLLRAELRRQGINPTVVKPKPKPLFGAAGSKISAKE
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNARMKKMVGDIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIETLKGKIKKALFYPAAVVAVALIVSSVLLVWVVPQFEEVFKSFGADLPAFTQLIVAASRFMVSWWWI
ILLALVGSIVGFLYAYKRSPAMQHTMDKLILKVPVIGQIMHNSAIARFARTTGVTFKAGVPLVEALGIVAGATGNSVYEK
AVLRMRDDVAVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLASVV
MSVTRSAIKNQPVARGTSQMLPFVWEGTDKRGIKMKGEQQAKSSNLLRAELRRQGINPTVVKPKPKPLFGAAGSKISAKE
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNARMKKMVGDIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIETLKGKIKKALFYPAAVVAVALIVSSVLLVWVVPQFEEVFKSFGADLPAFTQLIVAASRFMVSWWWI
ILLALVGSIVGFLYAYKRSPAMQHTMDKLILKVPVIGQIMHNSAIARFARTTGVTFKAGVPLVEALGIVAGATGNSVYEK
AVLRMRDDVAVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLASVV
Nucleotide
Download Length: 1257 bp
>NTDB_id=170136 AXG53_RS04880 WP_062166722.1 1137756..1139012(+) (pilC) [Stenotrophomonas sp. KCTC 12332 strain YM1]
ATGTCCGTCACCCGTAGCGCCATCAAGAACCAGCCGGTTGCCCGCGGCACCAGCCAGATGTTGCCGTTTGTCTGGGAGGG
AACCGACAAGCGTGGCATCAAGATGAAAGGCGAGCAACAGGCCAAGAGTTCCAACCTGCTGCGTGCCGAACTGCGCCGAC
AGGGGATCAACCCCACGGTGGTCAAGCCCAAGCCCAAGCCTCTGTTCGGCGCCGCTGGCTCGAAGATATCGGCCAAGGAA
ATCGCCTTCTTCAGTCGCCAGATGGCGACGATGATGAAGTCCGGCGTGCCTATCGTCGGCTCGCTGGAGATCATCGGCGA
GGGCCACAAAAACGCTCGCATGAAAAAGATGGTGGGTGATATCCGCACCGACATCGAAGGTGGCTCCTCGCTGCACGAGG
CCATCAGCAAGCACCCTGTGCAGTTTGACGAGCTATACCGCAACCTGGTGAGGGCCGGCGAAGGCGCAGGTGTACTTGAA
ACCGTGCTGGACACGGTTGCCAACTACAAAGAGAACATCGAAACCCTCAAGGGCAAGATCAAGAAAGCCCTGTTCTATCC
CGCCGCAGTGGTAGCCGTTGCACTGATTGTCAGCTCGGTACTACTGGTGTGGGTGGTACCGCAGTTTGAAGAAGTCTTCA
AGAGCTTCGGCGCCGACCTGCCTGCTTTCACTCAGTTGATTGTCGCTGCGTCACGATTCATGGTGTCCTGGTGGTGGATC
ATATTGCTGGCACTGGTTGGATCGATAGTTGGCTTTCTTTATGCCTATAAGCGCTCCCCGGCCATGCAGCACACGATGGA
CAAGCTGATCCTGAAGGTGCCTGTCATCGGCCAGATCATGCATAACAGCGCGATCGCGCGCTTCGCGCGCACGACTGGCG
TGACCTTCAAGGCCGGCGTCCCCTTGGTCGAAGCGCTCGGCATCGTTGCTGGCGCCACCGGCAACAGCGTCTACGAAAAA
GCGGTTCTGCGCATGCGCGACGACGTCGCCGTCGGCTACCCGGTCAACATGGCGATGAAACAGGTCAACCTGTTTCCGCA
CATGGTCATCCAGATGACTGCAATCGGTGAAGAAGCCGGCGCGCTGGATGCGATGCTGTTCAAGGTTGCCGAGTACTACG
AGCAGGAAGTGAACAACGCGGTCGACGCGCTGAGCAGCCTGTTGGAACCGATGATCATGGTATTCATCGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAACTGGCATCTGTGGTTTAA
ATGTCCGTCACCCGTAGCGCCATCAAGAACCAGCCGGTTGCCCGCGGCACCAGCCAGATGTTGCCGTTTGTCTGGGAGGG
AACCGACAAGCGTGGCATCAAGATGAAAGGCGAGCAACAGGCCAAGAGTTCCAACCTGCTGCGTGCCGAACTGCGCCGAC
AGGGGATCAACCCCACGGTGGTCAAGCCCAAGCCCAAGCCTCTGTTCGGCGCCGCTGGCTCGAAGATATCGGCCAAGGAA
ATCGCCTTCTTCAGTCGCCAGATGGCGACGATGATGAAGTCCGGCGTGCCTATCGTCGGCTCGCTGGAGATCATCGGCGA
GGGCCACAAAAACGCTCGCATGAAAAAGATGGTGGGTGATATCCGCACCGACATCGAAGGTGGCTCCTCGCTGCACGAGG
CCATCAGCAAGCACCCTGTGCAGTTTGACGAGCTATACCGCAACCTGGTGAGGGCCGGCGAAGGCGCAGGTGTACTTGAA
ACCGTGCTGGACACGGTTGCCAACTACAAAGAGAACATCGAAACCCTCAAGGGCAAGATCAAGAAAGCCCTGTTCTATCC
CGCCGCAGTGGTAGCCGTTGCACTGATTGTCAGCTCGGTACTACTGGTGTGGGTGGTACCGCAGTTTGAAGAAGTCTTCA
AGAGCTTCGGCGCCGACCTGCCTGCTTTCACTCAGTTGATTGTCGCTGCGTCACGATTCATGGTGTCCTGGTGGTGGATC
ATATTGCTGGCACTGGTTGGATCGATAGTTGGCTTTCTTTATGCCTATAAGCGCTCCCCGGCCATGCAGCACACGATGGA
CAAGCTGATCCTGAAGGTGCCTGTCATCGGCCAGATCATGCATAACAGCGCGATCGCGCGCTTCGCGCGCACGACTGGCG
TGACCTTCAAGGCCGGCGTCCCCTTGGTCGAAGCGCTCGGCATCGTTGCTGGCGCCACCGGCAACAGCGTCTACGAAAAA
GCGGTTCTGCGCATGCGCGACGACGTCGCCGTCGGCTACCCGGTCAACATGGCGATGAAACAGGTCAACCTGTTTCCGCA
CATGGTCATCCAGATGACTGCAATCGGTGAAGAAGCCGGCGCGCTGGATGCGATGCTGTTCAAGGTTGCCGAGTACTACG
AGCAGGAAGTGAACAACGCGGTCGACGCGCTGAGCAGCCTGTTGGAACCGATGATCATGGTATTCATCGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAACTGGCATCTGTGGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
53.465 |
96.651 |
0.517 |
| pilC | Pseudomonas stutzeri DSM 10701 |
52.778 |
94.737 |
0.5 |
| pilC | Acinetobacter baumannii D1279779 |
50.62 |
96.411 |
0.488 |
| pilC | Acinetobacter baylyi ADP1 |
50 |
97.129 |
0.486 |
| pilG | Neisseria gonorrhoeae MS11 |
43.5 |
95.694 |
0.416 |
| pilG | Neisseria meningitidis 44/76-A |
43 |
95.694 |
0.411 |
| pilC | Vibrio cholerae strain A1552 |
40.347 |
96.651 |
0.39 |
| pilC | Vibrio campbellii strain DS40M4 |
39.5 |
95.694 |
0.378 |