Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C3029_RS09215 Genome accession   NZ_CP014269
Coordinates   1839183..1839812 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli B strain C3029     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834183..1844812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3029_RS09190 (C3029_09190) ycbZ 1834584..1836344 (-) 1761 WP_000156518.1 AAA family ATPase -
  C3029_RS09195 (C3029_09195) matP 1836530..1836982 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C3029_RS09200 (C3029_09200) ompA 1837058..1838098 (-) 1041 WP_000750416.1 porin OmpA -
  C3029_RS09210 (C3029_09210) sulA 1838455..1838964 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C3029_RS09215 (C3029_09215) sxy/tfoX 1839183..1839812 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C3029_RS09220 (C3029_09220) yccS 1839775..1841937 (-) 2163 WP_000875061.1 YccS family putative transporter -
  C3029_RS09225 (C3029_09225) yccF 1841947..1842393 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C3029_RS09230 (C3029_09230) helD 1842516..1844570 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=170072 C3029_RS09215 WP_000839153.1 1839183..1839812(+) (sxy/tfoX) [Escherichia coli B strain C3029]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=170072 C3029_RS09215 WP_000839153.1 1839183..1839812(+) (sxy/tfoX) [Escherichia coli B strain C3029]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment