Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   AXE83_RS00060 Genome accession   NZ_CP014264
Coordinates   14543..15205 (-) Length   220 a.a.
NCBI ID   WP_060954956.1    Uniprot ID   A0A0X8JWD7
Organism   Streptococcus sp. oral taxon 431 strain F0610 (5-114)     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9543..20205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE83_RS00035 (AXE83_00035) - 9686..9952 (-) 267 WP_000128621.1 Veg family protein -
  AXE83_RS00040 (AXE83_00040) dnaB 9949..11307 (-) 1359 WP_060954954.1 replicative DNA helicase -
  AXE83_RS00045 (AXE83_00045) rplI 11350..11802 (-) 453 WP_000864204.1 50S ribosomal protein L9 -
  AXE83_RS00050 (AXE83_00050) - 11799..13772 (-) 1974 WP_060954955.1 DHH family phosphoesterase -
  AXE83_RS00055 (AXE83_00055) raiA 13921..14463 (-) 543 WP_045762429.1 ribosome-associated translation inhibitor RaiA -
  AXE83_RS00060 (AXE83_00060) comFC/cflB 14543..15205 (-) 663 WP_060954956.1 ComF family protein Machinery gene
  AXE83_RS00065 (AXE83_00065) comFA/cflA 15202..16500 (-) 1299 WP_060954957.1 DEAD/DEAH box helicase Machinery gene
  AXE83_RS00070 (AXE83_00070) - 16556..17191 (+) 636 WP_060954958.1 YigZ family protein -
  AXE83_RS00075 (AXE83_00075) - 17208..17651 (+) 444 WP_060954959.1 PH domain-containing protein -
  AXE83_RS00080 (AXE83_00080) cysK 17748..18674 (+) 927 WP_060954960.1 cysteine synthase A -
  AXE83_RS00085 (AXE83_00085) tsf 18789..19829 (-) 1041 WP_060954961.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25229.43 Da        Isoelectric Point: 8.2624

>NTDB_id=169967 AXE83_RS00060 WP_060954956.1 14543..15205(-) (comFC/cflB) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
MKCLLCGKSLQTEITFTNLLCFKKEEELVCESCISSFESIGGNHCPSCFKKGISIICQDCQFWCKKGVKVDHVALYSYNQ
AMKEYFSHYKFDGDYLLRKVFSEILQKELKKYKDYHIVIVPLSDHRLKSRGFNQVEGLIKDTGLAYLDILVKKEVEASSS
KNRSDRLLAEFPFLLKDGVKLPENILLFDDIYTTGTTLNRLKSMLLEAGCQNIKTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=169967 AXE83_RS00060 WP_060954956.1 14543..15205(-) (comFC/cflB) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
ATGAAGTGTTTATTGTGTGGTAAAAGCTTGCAAACAGAGATAACTTTTACTAACCTCCTCTGTTTTAAAAAGGAGGAGGA
ACTAGTTTGTGAATCCTGTATTTCGTCTTTCGAGAGCATTGGTGGTAATCATTGTCCTAGTTGTTTTAAAAAAGGAATAT
CAATCATCTGTCAAGATTGTCAATTTTGGTGTAAAAAAGGTGTAAAGGTTGATCATGTGGCTCTTTATTCCTATAATCAG
GCCATGAAAGAATATTTTAGTCACTATAAATTTGATGGTGATTATCTTCTTAGAAAGGTATTTTCTGAGATATTGCAAAA
AGAGTTAAAGAAGTATAAGGACTATCATATTGTGATTGTTCCTCTGAGTGACCATCGTTTAAAAAGCAGAGGCTTTAATC
AAGTTGAAGGTTTGATAAAGGATACTGGATTAGCATATCTGGATATTTTGGTTAAAAAAGAAGTGGAGGCTAGTTCTTCA
AAAAATCGATCGGATCGCTTACTTGCAGAATTTCCCTTTTTGTTGAAAGATGGAGTGAAGCTTCCAGAAAATATCTTACT
CTTTGATGATATTTATACAACTGGAACTACCTTGAATCGTCTTAAAAGTATGCTATTAGAGGCTGGTTGTCAGAATATTA
AAACTTTTTCCCTCGCAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8JWD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

59.091

100

0.591
  comFC/cflB Streptococcus pneumoniae TIGR4

57.727

100

0.577
  comFC/cflB Streptococcus pneumoniae Rx1

57.727

100

0.577
  comFC/cflB Streptococcus pneumoniae D39

57.727

100

0.577
  comFC/cflB Streptococcus pneumoniae R6

57.727

100

0.577
  comFC/cflB Streptococcus mitis SK321

56.818

100

0.568

Multiple sequence alignment