Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   AXF25_RS14740 Genome accession   NZ_CP014261
Coordinates   316976..317185 (+) Length   69 a.a.
NCBI ID   WP_014930816.1    Uniprot ID   -
Organism   Listeria monocytogenes strain 2015TE19005-1355     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 311976..322185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF25_RS01505 (AXF25_01505) - 312507..313337 (+) 831 WP_003722911.1 MBL fold metallo-hydrolase -
  AXF25_RS01510 (AXF25_01510) htrA 313435..314940 (+) 1506 WP_014930814.1 serine protease HtrA -
  AXF25_RS01515 (AXF25_01515) rlmH 315627..316106 (+) 480 WP_008946708.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AXF25_RS14675 (AXF25_01520) - 316563..316994 (+) 432 WP_158423066.1 recombinase family protein -
  AXF25_RS14740 (AXF25_01525) ccrB 316976..317185 (+) 210 WP_014930816.1 recombinase zinc beta ribbon domain-containing protein Machinery gene
  AXF25_RS14680 (AXF25_01530) - 317214..317747 (+) 534 WP_014930817.1 hypothetical protein -
  AXF25_RS01535 (AXF25_01535) - 317887..318999 (-) 1113 WP_060934451.1 restriction endonuclease subunit S -
  AXF25_RS01540 (AXF25_01540) - 318992..320611 (-) 1620 WP_014600447.1 HsdM family class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7910.99 Da        Isoelectric Point: 10.3845

>NTDB_id=169926 AXF25_RS14740 WP_014930816.1 316976..317185(+) (ccrB) [Listeria monocytogenes strain 2015TE19005-1355]
MAANNVINRLKDGTKKRIRYYSCFQFRNKGASVCHANSIRADQAEQFVAERLKETVQHPQIIKEVNSST

Nucleotide


Download         Length: 210 bp        

>NTDB_id=169926 AXF25_RS14740 WP_014930816.1 316976..317185(+) (ccrB) [Listeria monocytogenes strain 2015TE19005-1355]
ATGGCAGCAAATAATGTGATCAATCGACTAAAGGATGGAACCAAAAAACGTATTCGGTATTATTCCTGTTTTCAATTTCG
AAATAAAGGAGCGAGTGTTTGCCATGCGAATTCAATCCGAGCAGATCAAGCAGAACAGTTTGTGGCTGAAAGGTTGAAGG
AAACCGTTCAACACCCACAAATTATAAAAGAAGTTAATTCAAGCACTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

58.462

94.203

0.551

Multiple sequence alignment