Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AXF35_RS03075 Genome accession   NZ_CP014255
Coordinates   643934..645445 (-) Length   503 a.a.
NCBI ID   WP_027223641.1    Uniprot ID   A0AAX2IU22
Organism   Legionella pneumophila subsp. pascullei strain F-4185     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 638934..650445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF35_RS03040 (AXF35_13705) - 639020..639691 (-) 672 WP_027223634.1 TIGR00153 family protein -
  AXF35_RS03045 (AXF35_13700) - 639883..640647 (+) 765 WP_027223635.1 type II/III secretion system protein -
  AXF35_RS03050 (AXF35_13695) - 640835..641398 (+) 564 WP_027223636.1 YqgE/AlgH family protein -
  AXF35_RS03055 (AXF35_13690) ruvX 641391..641810 (+) 420 WP_027223637.1 Holliday junction resolvase RuvX -
  AXF35_RS03060 (AXF35_13685) - 641860..642753 (+) 894 WP_027223638.1 aspartate carbamoyltransferase catalytic subunit -
  AXF35_RS03065 (AXF35_13680) - 642809..643135 (-) 327 WP_027223639.1 hypothetical protein -
  AXF35_RS03070 (AXF35_13675) - 643448..643831 (-) 384 WP_027223640.1 hypothetical protein -
  AXF35_RS03075 (AXF35_13670) comM 643934..645445 (-) 1512 WP_027223641.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AXF35_RS03080 (AXF35_13665) ubiK 645510..645764 (-) 255 WP_027223642.1 ubiquinone biosynthesis accessory factor UbiK -
  AXF35_RS03085 (AXF35_13660) - 645907..646245 (+) 339 WP_027223643.1 P-II family nitrogen regulator -
  AXF35_RS03090 (AXF35_13655) - 646255..646836 (-) 582 WP_027223644.1 5-formyltetrahydrofolate cyclo-ligase -
  AXF35_RS03095 (AXF35_13650) - 647083..647268 (+) 186 WP_010946331.1 PA3496 family putative envelope integrity protein -
  AXF35_RS03100 (AXF35_13645) - 647282..648100 (+) 819 WP_027223645.1 aminotransferase class IV -
  AXF35_RS03105 (AXF35_13640) - 648125..648808 (-) 684 WP_050598322.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55078.63 Da        Isoelectric Point: 8.3307

>NTDB_id=169807 AXF35_RS03075 WP_027223641.1 643934..645445(-) (comM) [Legionella pneumophila subsp. pascullei strain F-4185]
MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVYTANSL
REVCDYLCQGTPLQNLPRKPDLVLNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMARRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPISLVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
SHTEKQSPAIREKVIKMHEIQITRQNSLNANLNSKTCEMVCELGSEEQQFLRDVMSKLKLSARGYHRLLKVGRTIADMNE
CNKVRLIHLQQALSYKQILHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=169807 AXF35_RS03075 WP_027223641.1 643934..645445(-) (comM) [Legionella pneumophila subsp. pascullei strain F-4185]
ATGAATCTCGCATTTACCAAAACGCGAAGTACTATTGGTATTGTCGCACAACCAGTATCTGTCGAAGTCCATTTATCAAA
TGGCTTGCCAAGTTTTACTATGGTAGGACTTGCTGAAACTGCCGTGAAAGAAAGTAAAGACAGAGTGCGCAGCGCCATTA
TAAATAGCCAATTCGAATTTCCGTGTCGTAAAATTACTGTTAATCTTGGTCCTGCCAATTTACCTAAAACAGGAAGTGGT
TTTGACTTGCCTATTGCATTAGGAATACTCGCAGCATCAGAGCAAATTCCTCTTACCAATCTTGCCAATCACGAATTTAT
TGGAGAATTGGCTTTAAGTGGCGAGCTTAGAGGGGTTTCTGCCATTATTCCTGCTGTTCTTGCAGCTCATAAAGACAATC
AACATCTGATTATAGCGAATGCCAATGCTGCCGAAGCTTCTTTAACCGGGCATCCCAAAGTCTATACTGCCAATAGTTTA
CGCGAAGTTTGCGATTATCTATGCCAAGGTACTCCTTTACAGAACTTACCCCGCAAACCAGATCTTGTATTAAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGACAACATCATGCAAAAAATGCTATGGTCATTGCTGCCTGTGGAGGACACAGTA
TTCTGCTAAGTGGCGCACCAGGCAGTGGAAAAACGATGATGGCAAGAAGATTTAGTACCTTGCTCCCCGAGCTATCCGAA
ACACAAGCTCTCGAATGTGCGGCTATCAATTCAATTCGAGGCAAATTACCTGATTTCAGAGAATGGCGTTTACCTCCTTT
TCGCGCACCACATCATACGGCTTCCCCTATCTCATTAGTTGGAGGGGGCAACCCGCCTAAACCTGGTGAAATTTCATTGG
CTCATCACGGTGTATTGTTTTTAGATGAATTACCCGAATTTAACCGGCAAGTACTGGAGACACTTAGAGAGCCTTTGGAG
TCAGGGCATATTTGCATCTCAAGGGCAGCTGCACAAATAGAGTTTCCGGCCAAATTTCAATTAATCGCAGCAATGAATCC
TTGTCCTTGTGGTCAATGGGGTAACTCACAAGCCAATTGCTTATGTACCCCTGATAGAATCAGCCGATATTTGGCAAAAC
TATCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACCATTCACGCATTATCTCAAGAAGAGTTAATTAAACCAAAC
TCTCATACAGAAAAACAAAGTCCTGCTATCAGAGAAAAGGTAATAAAAATGCATGAAATACAAATAACACGACAAAATAG
TCTCAATGCCAATTTAAACTCTAAAACATGCGAAATGGTTTGCGAATTGGGATCAGAAGAGCAACAGTTTCTTAGAGACG
TCATGAGTAAACTAAAACTGTCGGCTCGTGGTTATCATCGTTTGCTAAAAGTAGGAAGGACCATTGCTGATATGAATGAA
TGTAATAAAGTCAGGCTAATACACCTGCAACAGGCTTTATCCTATAAACAAATCTTGCATTTGCCCAAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

94.036

100

0.94
  comM Legionella pneumophila strain ERS1305867

94.036

100

0.94
  comM Haemophilus influenzae Rd KW20

49.803

100

0.503
  comM Vibrio cholerae strain A1552

50.099

100

0.501
  comM Vibrio campbellii strain DS40M4

49.505

100

0.497
  comM Glaesserella parasuis strain SC1401

46.85

100

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.927

98.608

0.404

Multiple sequence alignment