Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KO07_RS12280 Genome accession   NZ_CP014252
Coordinates   2479469..2479951 (-) Length   160 a.a.
NCBI ID   WP_060868958.1    Uniprot ID   A0A5L8BZA6
Organism   Listeria monocytogenes strain CFSAN023459     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2474469..2484951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO07_RS12240 (KO07_12195) - 2475064..2476395 (-) 1332 WP_060868956.1 PBSX family phage terminase large subunit -
  KO07_RS12245 (KO07_12200) - 2476364..2476906 (-) 543 WP_060868957.1 terminase small subunit -
  KO07_RS12250 (KO07_12205) - 2476964..2477227 (-) 264 WP_010990212.1 DUF6275 family protein -
  KO07_RS12255 (KO07_12210) - 2477254..2477553 (-) 300 WP_009911405.1 phage protein -
  KO07_RS12260 (KO07_12215) - 2477948..2478382 (-) 435 WP_010990210.1 ArpU family phage packaging/lysis transcriptional regulator -
  KO07_RS15720 - 2478405..2478530 (-) 126 WP_023548497.1 hypothetical protein -
  KO07_RS12265 (KO07_12220) - 2478523..2478906 (-) 384 WP_023548496.1 DUF2481 family protein -
  KO07_RS12270 (KO07_12225) - 2478910..2479314 (-) 405 WP_042227941.1 DUF1064 domain-containing protein -
  KO07_RS12275 (KO07_12230) - 2479259..2479450 (-) 192 WP_003734994.1 hypothetical protein -
  KO07_RS12280 (KO07_12235) ssbA 2479469..2479951 (-) 483 WP_060868958.1 single-stranded DNA-binding protein Machinery gene
  KO07_RS12285 (KO07_12240) - 2479948..2480532 (-) 585 WP_031645862.1 DUF3310 domain-containing protein -
  KO07_RS12290 (KO07_12245) - 2480548..2480895 (-) 348 WP_023548489.1 hypothetical protein -
  KO07_RS12295 (KO07_12250) - 2480909..2481136 (-) 228 WP_023548487.1 ASCH/PUA domain-containing protein -
  KO07_RS15765 - 2481340..2481651 (-) 312 Protein_2404 pentapeptide repeat-containing protein -
  KO07_RS15770 - 2481626..2481685 (-) 60 Protein_2405 hypothetical protein -
  KO07_RS15775 - 2481661..2481756 (-) 96 Protein_2406 pentapeptide repeat-containing protein -
  KO07_RS15780 - 2481769..2482050 (-) 282 Protein_2407 pentapeptide repeat-containing protein -
  KO07_RS12305 - 2482047..2482220 (-) 174 WP_031640953.1 hypothetical protein -
  KO07_RS12310 (KO07_12270) - 2482221..2482742 (-) 522 WP_060868960.1 YopX family protein -
  KO07_RS12315 (KO07_12275) - 2482739..2483293 (-) 555 WP_031645727.1 DUF1642 domain-containing protein -
  KO07_RS12320 (KO07_12280) - 2483290..2483970 (-) 681 WP_031645728.1 hypothetical protein -
  KO07_RS12325 (KO07_12285) - 2483983..2484927 (-) 945 WP_023548469.1 site-specific integrase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17736.50 Da        Isoelectric Point: 4.9725

>NTDB_id=169798 KO07_RS12280 WP_060868958.1 2479469..2479951(-) (ssbA) [Listeria monocytogenes strain CFSAN023459]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQNGEREADFIQCVVWRKPAENAANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNAEGATSNNYQSGSNYSNNNQTSSYRADTSQKSDSFANEGKPIDINPDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=169798 KO07_RS12280 WP_060868958.1 2479469..2479951(-) (ssbA) [Listeria monocytogenes strain CFSAN023459]
ATGATGAATCGTGTAGTACTTGTAGGTCGATTAACAAAGGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCAGTTGC
GACTTTTACATTAGCTGTAAACCGCACTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAACGCAGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGTCGAATACAGACTCGA
AATTATGAGGATAACGACGGTAAACGCGTTTTTGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
TAACAACGCAGAAGGCGCTACATCGAATAATTATCAAAGTGGGTCTAATTATTCAAATAACAACCAAACAAGCTCATATC
GAGCTGATACGAGCCAGAAGAGCGATTCATTTGCAAACGAGGGTAAACCGATAGATATTAATCCGGATGATTTACCATTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L8BZA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.279

100

0.712
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

66.25

0.412
  ssb Neisseria meningitidis MC58

34.682

100

0.375
  ssb Neisseria gonorrhoeae MS11

34.104

100

0.369

Multiple sequence alignment