Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOKO_RS00730 Genome accession   NZ_CP014226
Coordinates   146285..146893 (+) Length   202 a.a.
NCBI ID   WP_066443702.1    Uniprot ID   A0A109UKP3
Organism   Halomonas chromatireducens strain AGD 8-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 141285..151893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOKO_RS00720 (LOKO_00143) uvrA 141790..144651 (-) 2862 WP_066443696.1 excinuclease ABC subunit UvrA -
  LOKO_RS00725 (LOKO_00144) - 144814..146205 (+) 1392 WP_066443700.1 MFS transporter -
  LOKO_RS00730 (LOKO_00145) ssb 146285..146893 (+) 609 WP_066443702.1 single-stranded DNA-binding protein Machinery gene
  LOKO_RS00735 (LOKO_00146) - 146925..147809 (+) 885 WP_066443704.1 sugar nucleotide-binding protein -
  LOKO_RS00740 (LOKO_00147) - 147806..148573 (+) 768 WP_066443707.1 lysophospholipid acyltransferase family protein -
  LOKO_RS00745 (LOKO_00148) fabB 148668..149885 (-) 1218 WP_066443710.1 beta-ketoacyl-ACP synthase I -
  LOKO_RS00750 (LOKO_00149) fabA 149899..150414 (-) 516 WP_043513722.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21738.73 Da        Isoelectric Point: 6.0895

>NTDB_id=169612 LOKO_RS00730 WP_066443702.1 146285..146893(+) (ssb) [Halomonas chromatireducens strain AGD 8-3]
MARGVNKVILIGNLGQDPEVRFMPSGSPVANLRVATTDTWTDKQSGQKQERTEWHSVVLFNRLAEIAQQFLKKGSRVYLE
GRLQTRKWQGQDGQDRYTTEIVVNDMQMLDSRGGDAPGQGAGFGAQAQAPQQGGYGNAPHQQGGYGGGQPQPRPAPAAPP
QQGGHQQGGQQQGGQQQGGQQHGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=169612 LOKO_RS00730 WP_066443702.1 146285..146893(+) (ssb) [Halomonas chromatireducens strain AGD 8-3]
ATGGCCCGTGGCGTCAACAAGGTCATTCTCATCGGCAACCTGGGGCAGGACCCCGAGGTCCGCTTCATGCCGTCCGGCAG
TCCCGTCGCCAACCTGCGCGTCGCCACGACCGACACGTGGACCGACAAGCAGAGCGGCCAGAAGCAGGAGCGCACCGAGT
GGCATTCGGTGGTGCTCTTCAACCGACTGGCCGAGATCGCCCAGCAATTCCTGAAGAAGGGCTCCCGGGTCTATCTCGAG
GGTCGTCTGCAGACACGCAAGTGGCAGGGGCAGGACGGTCAGGATCGCTATACCACCGAGATCGTGGTCAACGACATGCA
GATGCTCGATAGCCGAGGCGGCGATGCCCCCGGCCAGGGTGCGGGCTTTGGCGCGCAGGCCCAGGCGCCCCAGCAGGGGG
GATACGGCAACGCTCCACATCAGCAGGGCGGTTATGGCGGCGGGCAGCCCCAGCCGCGCCCGGCCCCGGCGGCCCCCCCG
CAACAGGGTGGCCATCAGCAAGGTGGGCAACAGCAGGGTGGTCAACAGCAGGGTGGCCAGCAGCACGGCAACTATGGTGC
CCCCGACCCGGGCAGCTTCGACGATTTCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109UKP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.732

100

0.515
  ssb Glaesserella parasuis strain SC1401

46.948

100

0.495
  ssb Neisseria gonorrhoeae MS11

43.719

98.515

0.431
  ssb Neisseria meningitidis MC58

42.029

100

0.431

Multiple sequence alignment