Detailed information NTG0169393

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AWU82_RS26150
• Genome accession: NZ_CP014205
• Coordinates: 5735937..5736809 (+)
• Length: 290 a.a.
• NCBI ID: WP_064382079.1
• Uniprot ID: -
• Organism: Pseudomonas glycinae strain MS586
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5730937..5741809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AWU82_RS26125 (AWU82_16190)	-	5731233..5731529 (+)	297	WP_064382075.1	DUF2845 domain-containing protein	-
AWU82_RS26130 (AWU82_16195)	-	5731696..5732052 (-)	357	WP_011335977.1	BON domain-containing protein	-
AWU82_RS26135 (AWU82_16200)	pilA	5732351..5732788 (-)	438	WP_064382076.1	pilin	Machinery gene
AWU82_RS26140 (AWU82_16205)	pilB	5733015..5734715 (+)	1701	WP_064382077.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AWU82_RS26145 (AWU82_16210)	pilC	5734718..5735935 (+)	1218	WP_064382078.1	type II secretion system F family protein	Machinery gene
AWU82_RS26150 (AWU82_16215)	pilD	5735937..5736809 (+)	873	WP_064382079.1	prepilin peptidase	Machinery gene
AWU82_RS26155 (AWU82_16220)	coaE	5736806..5737429 (+)	624	WP_064382080.1	dephospho-CoA kinase	-
AWU82_RS26160 (AWU82_16225)	yacG	5737426..5737626 (+)	201	WP_011335983.1	DNA gyrase inhibitor YacG	-
AWU82_RS26165 (AWU82_16230)	-	5737633..5737848 (-)	216	WP_064382081.1	hypothetical protein	-
AWU82_RS26170 (AWU82_16235)	-	5737914..5738603 (-)	690	WP_064382082.1	energy-coupling factor ABC transporter permease	-
AWU82_RS26175 (AWU82_16240)	-	5738600..5739067 (-)	468	WP_064382083.1	hypothetical protein	-
AWU82_RS26180 (AWU82_16245)	-	5739198..5739824 (+)	627	WP_007959580.1	DUF1780 domain-containing protein	-
AWU82_RS26185 (AWU82_16250)	-	5739821..5740348 (+)	528	WP_064382084.1	MOSC domain-containing protein	-
AWU82_RS26190 (AWU82_16255)	-	5740400..5740573 (+)	174	WP_003228304.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32382.73 Da
• Isoelectric Point: 7.6831

>NTDB_id=169393 AWU82_RS26150 WP_064382079.1 5735937..5736809(+) (pilD) [Pseudomonas glycinae strain MS586]
MPIDELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGESPLPTYNLMLPHSQCPHCGHRIR
AWENIPMLSYVFLRGRCSSCSAPISKRYPLTELACGLLSAFIAWYLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVSLHDALWGAVLGYMALWTVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=169393 AWU82_RS26150 WP_064382079.1 5735937..5736809(+) (pilD) [Pseudomonas glycinae strain MS586]
ATGCCTATCGACGAACTCTTCAGTCTCTATCCGCTGGCCTTTGTCTTCACCGCCCTCCTGCTGGGGCTGGTGGTGGGCAG
TTTCCTCAACGTATTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCTCACGATGTACTGGGCC
TGCCCGGTGAATCGCCATTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAACATCCCGATGTTGAGTTACGTGTTCCTGCGCGGGCGCTGCTCAAGTTGCAGCGCCCCGATCAGCAAGCG
CTACCCGCTCACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCATTGCCTGGTACCTGGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAACATCAGTTACTGCCCGATGTATTGGTG
CTGCCGCTGCTGTGGTTGGGACTGATCGTCAACAGCTTCGAGCTGTTCGTATCGCTGCACGACGCACTGTGGGGCGCAGT
GCTGGGCTATATGGCGCTGTGGACGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTCTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGCGACCAGAAGACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.773	97.241	0.503
pilD	Vibrio campbellii strain DS40M4	50.709	97.241	0.493
pilD	Acinetobacter baumannii D1279779	48.175	94.483	0.455
pilD	Acinetobacter nosocomialis M2	47.81	94.483	0.452
pilD	Neisseria gonorrhoeae MS11	46.667	93.103	0.434