Detailed information NTG0169375

Bioinformatically predicted

Overview

• Name: recJ
• Type: Machinery gene
• Locus tag: A4W85_RS06560
• Genome accession: NZ_CP017570
• Coordinates: 1290371..1292683 (-)
• Length: 770 a.a.
• NCBI ID: WP_025016402.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.578
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1285371..1297683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W85_RS06535 (A4W85_06495)	-	1286509..1288251 (-)	1743	Protein_1258	ABC transporter ATP-binding protein	-
A4W85_RS06540 (A4W85_06500)	-	1288393..1288623 (-)	231	WP_011374970.1	YneF family protein	-
A4W85_RS06545 (A4W85_06505)	-	1288704..1288946 (-)	243	WP_016265356.1	DUF896 domain-containing protein	-
A4W85_RS06550 (A4W85_06510)	dinR/lexA	1289081..1289695 (+)	615	WP_011374972.1	transcriptional repressor LexA	Regulator
A4W85_RS06555 (A4W85_06515)	-	1289829..1290347 (-)	519	WP_011374973.1	adenine phosphoribosyltransferase	-
A4W85_RS06560 (A4W85_06520)	recJ	1290371..1292683 (-)	2313	WP_025016402.1	single-stranded-DNA-specific exonuclease RecJ	Machinery gene
A4W85_RS06565 (A4W85_06525)	galE	1292828..1293819 (+)	992	Protein_1264	UDP-glucose 4-epimerase GalE	-
A4W85_RS06570 (A4W85_06530)	-	1293905..1294270 (+)	366	WP_112217745.1	DUF1304 domain-containing protein	-
A4W85_RS06575 (A4W85_06535)	-	1294287..1294613 (+)	327	WP_016265359.1	heavy metal-binding domain-containing protein	-
A4W85_RS06580 (A4W85_06540)	-	1294663..1296498 (-)	1836	WP_251944672.1	WxL domain-containing protein	-
A4W85_RS06585 (A4W85_06545)	-	1296488..1296883 (-)	396	WP_016265361.1	LPXTG cell wall anchor domain-containing protein	-

Sequence

Protein

• Length: 770 a.a.
• Molecular weight: 84839.63 Da
• Isoelectric Point: 4.5390

>NTDB_id=169375 A4W85_RS06560 WP_025016402.1 1290371..1292683(-) (recJ) [Latilactobacillus sakei strain TMW 1.578]
MEAQYEWQLKPVPTEDELQTITKDNPLPKAAAQLLWQRGLRDAEQINDFMNPNVGQLHDPYALHDMQKAIDRIQEAIVNG
EKITIYGDYDADGITSTTLMKETLDDLGADVEVYVPNRFKDGYGPNLEAYKRLIENGTQLIVTVDNGVSGLEPIAYAQEH
GVDVVVTDHHELPSELPNAVAIVHPRHPEGQYPFGELCGVGVAFKVATALLEEIPYDKLDLAAIGTVCDIVPLVDENRTL
VSLGLQQLQNTDRPGLVALCQSAGLEQATLDATNIGFGIGPRLNAIGRLGDATLGVQLLTTLDDEEAVEQAQFIEQQNKK
RQGLVQEITATAMTIAETPENQASATLVIAHEGWHEGVLGIVASHVVEQTGKPTLVLTIDPETGLAKGSGRSVTAFHLFK
ALDAHRELLVHFGGHHMAVGLTAKVDQLALIQTAMNEYAQVNQLDLTGRQPLPVDLALTLADITPDLYQALQQLAPFGSD
NPEPLIELSAPQLADVKQIGADQKHLKMMAVDQQQQLAVLAFNKGALMPDLTAAEDVKLVGSLSENTWRGQTTLQLMVKD
LATSGQVVLDQRSNRLTKQLFQSTGDYVFFNDKMREQLQSYLPAGSQALLATDEQVATSQELIVVDEPADLTAFEQFYQQ
QQAAKLSLIFYAKHSAYLEGMPTKQQFATFLVYLRKHPNIEKARLAELAAYLKLQLPLMIFMLQVFFDLGFVRIERGLIT
AELQPEKHALESAPSYQKRLAKIEMEKQLVYSTFTEVKDWLATLPAVANR

Nucleotide

• Length: 2313 bp

>NTDB_id=169375 A4W85_RS06560 WP_025016402.1 1290371..1292683(-) (recJ) [Latilactobacillus sakei strain TMW 1.578]
TTGGAAGCACAATATGAATGGCAATTAAAACCAGTACCAACTGAAGATGAATTACAAACAATTACAAAAGACAATCCGCT
ACCCAAGGCTGCGGCCCAACTTTTGTGGCAACGTGGCTTGCGGGATGCAGAGCAGATCAATGATTTTATGAATCCCAATG
TCGGTCAACTTCACGATCCATACGCTTTGCATGATATGCAAAAGGCGATTGATCGAATTCAAGAAGCGATTGTGAACGGC
GAAAAAATTACGATTTATGGCGATTATGACGCGGACGGGATCACAAGTACCACTTTGATGAAGGAAACTTTAGACGACTT
AGGTGCCGATGTTGAAGTCTATGTGCCTAATCGTTTTAAGGATGGCTACGGGCCTAATTTAGAAGCTTATAAACGCTTGA
TTGAAAATGGCACCCAATTAATTGTGACCGTCGATAACGGGGTGAGTGGCTTAGAACCAATCGCTTATGCGCAAGAACAC
GGTGTTGACGTGGTCGTGACCGATCACCATGAATTACCATCAGAATTACCCAACGCAGTGGCGATTGTGCATCCCAGACA
TCCAGAAGGGCAATATCCTTTTGGCGAACTCTGTGGGGTCGGTGTGGCGTTTAAAGTGGCGACTGCTTTATTAGAAGAGA
TTCCTTACGATAAATTAGATTTAGCCGCAATCGGGACGGTTTGTGATATCGTCCCCCTAGTTGATGAAAACCGGACATTG
GTTAGTTTAGGCTTACAACAATTACAAAATACCGATCGACCAGGTTTGGTCGCATTGTGTCAATCAGCTGGCTTAGAACA
AGCGACACTAGATGCCACTAACATTGGCTTTGGGATTGGTCCCCGTTTAAACGCAATTGGTCGTTTAGGTGATGCAACTC
TTGGTGTGCAACTATTGACGACGCTTGATGATGAAGAAGCAGTCGAGCAGGCCCAATTTATTGAACAACAAAATAAAAAA
CGCCAAGGTCTAGTGCAAGAAATTACGGCAACGGCAATGACAATTGCTGAAACACCGGAAAACCAAGCGAGTGCCACCTT
AGTTATTGCCCACGAAGGTTGGCATGAAGGGGTTCTAGGGATTGTGGCTAGTCATGTTGTTGAACAGACCGGTAAACCAA
CCTTAGTCTTGACGATTGACCCGGAAACTGGTTTAGCTAAAGGCTCTGGCCGTAGTGTGACAGCTTTCCATTTATTTAAA
GCGTTAGATGCCCACCGTGAATTATTGGTTCATTTTGGTGGCCATCACATGGCAGTTGGCTTGACTGCTAAGGTTGATCA
ATTAGCACTGATTCAAACTGCAATGAACGAGTATGCGCAAGTTAATCAGTTAGATTTAACGGGACGCCAACCATTACCAG
TTGATTTGGCGCTGACGTTGGCTGATATTACACCTGATTTATATCAAGCATTGCAACAACTAGCACCGTTTGGCAGTGAT
AATCCAGAACCGTTGATTGAACTTAGCGCGCCCCAGTTGGCCGATGTCAAACAAATCGGTGCTGATCAGAAACATTTGAA
GATGATGGCGGTCGATCAACAACAACAATTAGCGGTTTTAGCTTTCAATAAAGGGGCTTTGATGCCCGATTTAACTGCCG
CTGAAGATGTGAAATTAGTCGGGAGTTTGAGTGAGAATACTTGGCGTGGCCAGACGACGTTGCAATTAATGGTAAAAGAC
CTTGCTACAAGTGGGCAAGTCGTACTTGATCAACGCAGCAATCGCCTGACAAAACAATTATTCCAATCAACAGGCGACTA
CGTCTTTTTTAATGATAAAATGCGCGAGCAACTGCAGTCTTATTTACCGGCAGGGAGTCAGGCGCTGTTAGCGACCGATG
AACAAGTTGCCACAAGCCAAGAGTTGATTGTGGTCGATGAACCAGCTGATTTAACTGCTTTTGAACAATTTTATCAACAA
CAACAGGCTGCTAAATTAAGCTTAATTTTTTATGCCAAACACTCTGCTTACTTAGAAGGAATGCCGACAAAACAACAGTT
TGCGACCTTCTTAGTTTACTTACGGAAGCATCCGAACATTGAAAAAGCGCGGTTAGCTGAATTAGCAGCGTATTTAAAAT
TACAATTACCGTTAATGATTTTCATGTTGCAGGTGTTTTTTGACCTCGGATTTGTTAGAATAGAACGTGGTCTGATTACG
GCCGAGTTACAACCTGAAAAGCATGCACTGGAAAGTGCACCAAGTTATCAAAAACGATTAGCTAAAATTGAAATGGAAAA
ACAGCTTGTTTATTCAACCTTTACCGAGGTGAAAGACTGGCTAGCAACTCTCCCAGCAGTAGCAAATCGCTAA

Domains

Predicted by InterProScan.

• Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C) (568-761)

• DHH family (DHH) (82-226)

• RecJ OB domain (RecJ_OB) (454-560)

• DHHA1 domain (DHHA1) (318-437)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recJ	Streptococcus pneumoniae strain D39V	40.604	98.831	0.401
recJ	Bacillus subtilis subsp. subtilis str. 168	37.371	100	0.377