Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AWU82_RS11645 Genome accession   NZ_CP014205
Coordinates   2599524..2601017 (-) Length   497 a.a.
NCBI ID   WP_064379868.1    Uniprot ID   -
Organism   Pseudomonas glycinae strain MS586     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2594524..2606017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWU82_RS11630 (AWU82_07305) - 2594788..2596182 (-) 1395 WP_064379862.1 NorM family multidrug efflux MATE transporter -
  AWU82_RS11635 (AWU82_07310) - 2596340..2597260 (+) 921 WP_064379864.1 LysR substrate-binding domain-containing protein -
  AWU82_RS11640 (AWU82_07315) - 2597442..2599418 (+) 1977 WP_064379867.1 methyl-accepting chemotaxis protein -
  AWU82_RS11645 (AWU82_07320) comM 2599524..2601017 (-) 1494 WP_064379868.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AWU82_RS11650 - 2601196..2601366 (-) 171 WP_170928908.1 hypothetical protein -
  AWU82_RS11655 (AWU82_07325) - 2601401..2601853 (-) 453 WP_371915525.1 GNAT family N-acetyltransferase -
  AWU82_RS11660 (AWU82_07330) - 2602438..2602707 (+) 270 WP_064379873.1 HigA family addiction module antitoxin -
  AWU82_RS11665 (AWU82_07335) - 2602702..2603223 (-) 522 WP_064379874.1 Bro-N domain-containing protein -
  AWU82_RS11670 (AWU82_07340) - 2603625..2603885 (-) 261 WP_007920416.1 accessory factor UbiK family protein -
  AWU82_RS11675 (AWU82_07345) glnK 2604284..2604622 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  AWU82_RS11680 (AWU82_07350) - 2604660..2605997 (+) 1338 WP_007951904.1 ammonium transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52882.03 Da        Isoelectric Point: 8.2054

>NTDB_id=169375 AWU82_RS11645 WP_064379868.1 2599524..2601017(-) (comM) [Pseudomonas glycinae strain MS586]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLRVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAATLVAEARERQQRRQGCANAFLDLPGLKKHCKLSTADETWLETACERLTLSLRSAHRLLKVARTLADLEKRAD
ISREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=169375 AWU82_RS11645 WP_064379868.1 2599524..2601017(-) (comM) [Pseudomonas glycinae strain MS586]
ATGTCACTCGCCATCGTCCATAGCCGCGCCCAGATTGGCGTGGATGCCCCCGCTGTCACCGTTGAAGTTCACCTCGCCAA
TGGCTTGCCCTCGCTGACCATGGTCGGCCTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGACCGGGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACCTTGAATCTGGCACCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGGATACTGTCGGCGAGTGTGCAGGTGCCGACGTTGACGCTCGATGACGTGGAGTGTCT
GGGTGAGCTGGCGTTATCCGGCGCCGTGCGGGCGGTGCGCGGGGTGTTGCCGGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GGACGCTGGTGGTGCCGCGGGCGAATGCCGAGGAGGCGTGTCTGGCGTCGGGACTGAGGGTGATTGCGGTGGATCATCTG
CTGGAGGCCGTGGCGCATTTCAACGGGCATACACCGGTCGAGCCTTACGTCTCTGATGGGCTGATCCATGCCGCCAAACC
CTATCCCGACTTGAATGAGGTACAAGGCCAACTGGCCGCCAAGCGGGCACTGCTGATTGCCGCCGCCGGTGCGCACAATC
TGCTGTTCAGCGGGCCACCGGGGACGGGCAAGACGTTGCTGGCCAGTCGTTTGCCGGGCTTGCTGCCACCGCTGGCCGAG
AGTGAAGCGCTGGAAGTGGCGGCGATTCAATCCGTCGCCAGCGGGGCGCCGCTGACTCACTGGCCGCAGCGCCCGTTCCG
CCAACCGCATCACTCGGCCTCCGGGCCGGCACTGGTCGGAGGCAGCTCAAAACCGCAACCCGGCGAAATCACCCTCGCCC
ACCACGGCGTATTGTTTCTTGATGAACTGCCCGAGTTTGACCGCAAGGTGCTGGAGGTCCTGCGCGAACCGCTGGAATCC
GGCTGCATCGTCATCGCACGGGCCAAGGAACGGGTGCGGTTTCCCGCCCGATTCCAGCTGGTGGCAGCGATGAATCCCTG
CCCTTGTGGATATCTTGGCGAGCCCAGCGGCAAGTGCTCGTGCACGCCGGACATGGTGCAGCGCTATCGCAACAAGTTAT
CGGGGCCGTTGCTCGATCGGATCGATTTGCACCTGACGGTGGCGAGGGAAGCGACAGCGTTGAACCCGGCGGTGAAACCG
GGAGAGGACAGCGCCAGCGCAGCCACATTGGTCGCCGAGGCCCGCGAACGCCAGCAAAGACGCCAGGGGTGCGCCAATGC
GTTTCTCGATTTGCCGGGGCTGAAGAAGCACTGCAAGTTATCCACAGCCGATGAAACCTGGCTGGAGACGGCGTGCGAAA
GACTGACCTTGTCGCTGCGCTCGGCGCATCGGCTGCTCAAGGTCGCGCGGACACTGGCGGATCTGGAGAAGCGTGCGGAT
ATCAGTCGCGAACATCTGGCCGAAGCGTTGCAGTATCGGCCGGCGACTCAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Vibrio campbellii strain DS40M4

54.545

99.598

0.543
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Legionella pneumophila str. Paris

50

100

0.503
  comM Legionella pneumophila strain ERS1305867

50

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459

Multiple sequence alignment