Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PcP3B5_RS29325 Genome accession   NZ_CP014158
Coordinates   6717987..6719474 (+) Length   495 a.a.
NCBI ID   WP_061563093.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain P3B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6712987..6724474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PcP3B5_RS29305 (PcP3B5_60200) - 6713160..6714494 (-) 1335 WP_009614064.1 ammonium transporter -
  PcP3B5_RS29310 (PcP3B5_60210) glnK 6714530..6714868 (-) 339 WP_003457590.1 P-II family nitrogen regulator -
  PcP3B5_RS29315 (PcP3B5_60220) - 6715412..6717442 (+) 2031 WP_061563092.1 acyltransferase family protein -
  PcP3B5_RS29320 (PcP3B5_60230) - 6717535..6717801 (+) 267 WP_009614069.1 accessory factor UbiK family protein -
  PcP3B5_RS29325 (PcP3B5_60240) comM 6717987..6719474 (+) 1488 WP_061563093.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PcP3B5_RS29330 (PcP3B5_60250) - 6719478..6719708 (-) 231 WP_058488049.1 DUF1127 domain-containing protein -
  PcP3B5_RS29335 (PcP3B5_60260) - 6719883..6721334 (+) 1452 WP_058488048.1 PLP-dependent aminotransferase family protein -
  PcP3B5_RS29340 (PcP3B5_60270) - 6721669..6722481 (+) 813 WP_061563094.1 TlpA family protein disulfide reductase -
  PcP3B5_RS29345 (PcP3B5_60280) - 6722504..6723556 (-) 1053 WP_061563095.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52193.84 Da        Isoelectric Point: 7.5637

>NTDB_id=168942 PcP3B5_RS29325 WP_061563093.1 6717987..6719474(+) (comM) [Pseudomonas citronellolis strain P3B5]
MSLAIVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNSGFEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAANGQLAGASLDGLECLGELALSGALRPVQGVLPAALAARAAGRALVVPKENAEEASLASGLTVYAVGHL
LELAAHLTGQTPLAPYQARGLLRETPPYPDLAEVQGQAAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLSE
DEALQVAAIHSVSGRGPLTHWPQRPFRQPHHSASAAALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLEG
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVGRETTRLVPQSGS
LGSAEVAAQVASARERQLARQGCANAVLDLKSMHHNCALDDQDQAWLETAGERLDLSLRALHRILKVARTLADLEGAERI
ARSHLAEALQYRAGH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=168942 PcP3B5_RS29325 WP_061563093.1 6717987..6719474(+) (comM) [Pseudomonas citronellolis strain P3B5]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAGGCTCCCGGCGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCGTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCAACTCCGGCTTCGAATTCCCCGCCCGACGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATCGCCCTGGGCCTGCTCGCCGCCAACGGCCAGTTGGCCGGCGCCAGCCTGGACGGCCTCGAATGCCT
CGGTGAACTGGCCCTGTCCGGCGCCCTGCGCCCGGTGCAGGGCGTGCTACCGGCCGCCCTGGCGGCGCGCGCCGCCGGTC
GCGCCCTGGTGGTGCCGAAGGAGAATGCCGAGGAAGCAAGCCTGGCCAGCGGCCTGACCGTCTACGCCGTGGGCCACCTG
CTGGAGCTGGCCGCGCACCTGACCGGCCAGACGCCCCTGGCGCCCTACCAGGCCCGCGGCCTGCTGCGGGAAACCCCACC
CTACCCCGACCTCGCCGAGGTCCAGGGCCAGGCCGCGGCCAAGCGCGCCCTGCTGGTGGCCGCGGCCGGGTCGCACAACC
TGCTGCTGAGCGGCCCGCCGGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGGCTGCTGCCGCCGCTGAGCGAA
GACGAGGCGCTGCAGGTGGCGGCCATCCACTCCGTGTCCGGGCGCGGGCCGCTGACGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCGCACCACAGCGCCTCGGCCGCCGCGCTGGTAGGCGGCGGCAGCCGGCCGCAACCCGGGGAGATCACCCTGGCCC
ACGAAGGCGTGCTATTCCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTCCTGGAAGTGCTTCGCGAGCCCCTGGAAGGG
GGAGAAATCGTGATCGCCCGGGCCAACGGCCGGGTGCGCTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCAGCGGCCGCTGCCGTTGCACTCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTTGGCCGCGAGACCACGCGCCTCGTCCCTCAGAGTGGCAGC
CTGGGCAGCGCCGAGGTCGCCGCGCAGGTGGCCAGCGCCCGCGAGCGGCAACTGGCGCGGCAGGGTTGCGCGAACGCCGT
TCTCGACCTCAAGTCGATGCACCATAATTGTGCACTGGACGATCAGGACCAGGCCTGGCTGGAAACCGCAGGCGAGCGCC
TGGACCTGTCCCTGCGCGCCCTGCACCGCATCCTCAAGGTCGCCCGCACCCTGGCCGACCTGGAAGGCGCCGAACGCATC
GCCCGCTCGCACCTGGCCGAGGCCCTGCAATACCGCGCCGGGCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.855

100

0.57
  comM Vibrio campbellii strain DS40M4

56.855

100

0.57
  comM Haemophilus influenzae Rd KW20

55.01

100

0.566
  comM Glaesserella parasuis strain SC1401

53.557

100

0.547
  comM Legionella pneumophila str. Paris

49.901

100

0.509
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.473

Multiple sequence alignment