Detailed information NTG0168688

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: AUP74_RS05400
• Genome accession: NZ_CP014143
• Coordinates: 1256322..1257818 (-)
• Length: 498 a.a.
• NCBI ID: WP_069946682.1
• Uniprot ID: -
• Organism: Microbulbifer aggregans strain CCB-MM1
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	1248552..1265031	1256322..1257818	within	0

Gene organization within MGE regions

Location: 1248552..1265031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AUP74_RS05355 (AUP74_01085)	rep	1248552..1250585 (-)	2034	WP_069946674.1	DNA helicase Rep	-
AUP74_RS05360 (AUP74_01086)	-	1250761..1250982 (+)	222	WP_069946675.1	DUF3565 domain-containing protein	-
AUP74_RS05365 (AUP74_01087)	-	1250982..1251446 (+)	465	WP_069946676.1	YaiI/YqxD family protein	-
AUP74_RS05370 (AUP74_01088)	-	1251439..1251951 (+)	513	WP_083260836.1	GNAT family N-acetyltransferase	-
AUP74_RS05375 (AUP74_01089)	bla	1251977..1252867 (+)	891	WP_069946677.1	subclass B3 metallo-beta-lactamase	-
AUP74_RS05380 (AUP74_01090)	-	1252860..1253435 (+)	576	WP_069946678.1	GNAT family N-acetyltransferase	-
AUP74_RS05385 (AUP74_01091)	-	1253464..1254471 (+)	1008	WP_069946679.1	D-cysteine desulfhydrase family protein	-
AUP74_RS05390 (AUP74_01092)	-	1254816..1255718 (+)	903	WP_226999901.1	DUF1214 domain-containing protein	-
AUP74_RS05395 (AUP74_01093)	-	1255795..1256277 (-)	483	WP_069946681.1	methyltransferase family protein	-
AUP74_RS05400 (AUP74_01094)	comM	1256322..1257818 (-)	1497	WP_069946682.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
AUP74_RS05405 (AUP74_01095)	-	1257888..1258136 (-)	249	WP_069946683.1	accessory factor UbiK family protein	-
AUP74_RS05410 (AUP74_01096)	-	1258653..1259366 (+)	714	WP_226999902.1	TorF family putative porin	-
AUP74_RS05415 (AUP74_01097)	-	1259419..1259757 (+)	339	WP_069946685.1	P-II family nitrogen regulator	-
AUP74_RS05420 (AUP74_01098)	-	1259836..1261095 (+)	1260	WP_069946686.1	ammonium transporter	-
AUP74_RS05425 (AUP74_01099)	-	1261176..1261514 (+)	339	WP_043319767.1	P-II family nitrogen regulator	-
AUP74_RS05430 (AUP74_01100)	-	1261815..1262039 (+)	225	WP_069946687.1	hypothetical protein	-
AUP74_RS05435 (AUP74_01101)	-	1262218..1264110 (+)	1893	WP_069946688.1	DUF3604 domain-containing protein	-
AUP74_RS05440 (AUP74_01102)	xerC	1264135..1265025 (-)	891	WP_162493445.1	tyrosine recombinase XerC	-

Sequence

Protein

• Length: 498 a.a.
• Molecular weight: 52970.43 Da
• Isoelectric Point: 8.1195

>NTDB_id=168688 AUP74_RS05400 WP_069946682.1 1256322..1257818(-) (comM) [Microbulbifer aggregans strain CCB-MM1]
MSLSVTFARAQVGVSAPLVTVETHLANGLPAFNIVGLPEAAVRESRDRVRSALINSHFEFPQRRITVNLAPADLPKEGGR
YDLAIAIGILAASGQVPGDALETLEFIGELALTGALRPASGALPAAIACRDAGRTLIAPRECSDDVALANGGAQVADSLL
EVCAQLHGRERLPLAQAAPASDNLHSYPDLTEVRGQLRARRALEVAAAGGHNLLFYGPPGTGKTMLASRLPGILPPLSRE
ELIDVAAVYSSAGLPRQQQRPFRAPHHSASPTALVGGGSNPRPGEISLAHRGVLFLDEMPEFPRHALELLREPLENGEVR
LSRARAQVTYPARFQLVGAMNPCPCGYLGESRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVASMNAAELQEAPAGESSET
VRARVLAARERQLTRQGVVNAQLAGSALEQHCALGKSEAAMLRNSVTQLGLSARSYHRVLRVARTLADLAGIANIGTAQV
AEALAYRNLDRRPATVGA

Nucleotide

• Length: 1497 bp

>NTDB_id=168688 AUP74_RS05400 WP_069946682.1 1256322..1257818(-) (comM) [Microbulbifer aggregans strain CCB-MM1]
TTGAGCCTCTCCGTCACCTTTGCCCGCGCCCAGGTTGGCGTCTCCGCCCCGCTTGTTACTGTCGAAACCCATCTGGCCAA
TGGCCTGCCGGCATTTAATATTGTCGGTTTGCCCGAAGCCGCCGTGCGCGAGAGCCGTGATCGCGTGCGCAGCGCCCTGA
TCAACAGTCACTTTGAATTTCCCCAGCGCCGCATCACTGTCAACCTCGCACCCGCCGATCTGCCCAAGGAAGGCGGTCGC
TACGACCTGGCCATCGCCATCGGTATCCTCGCCGCCTCCGGACAGGTGCCCGGTGACGCGCTGGAAACACTGGAATTTAT
CGGTGAACTCGCCTTGACCGGCGCCCTGAGGCCGGCCAGCGGCGCGCTGCCCGCCGCCATCGCCTGCCGGGATGCGGGCC
GGACGCTGATTGCTCCCCGGGAATGCAGTGACGATGTGGCATTGGCAAATGGCGGGGCACAGGTTGCCGACTCACTGCTG
GAAGTCTGCGCCCAGTTGCACGGCCGCGAGCGCCTGCCCCTTGCCCAGGCAGCCCCTGCGAGCGACAACCTTCACAGCTA
TCCCGACCTCACCGAGGTGCGCGGCCAGCTGCGCGCCCGACGCGCACTGGAGGTTGCCGCGGCCGGCGGACACAACCTGC
TCTTTTATGGCCCGCCCGGTACCGGCAAGACCATGCTCGCCAGCAGGTTGCCGGGCATCCTGCCGCCGCTGTCGCGGGAA
GAATTAATCGATGTAGCCGCCGTCTACTCCAGTGCGGGACTGCCGCGGCAGCAGCAACGGCCATTTCGTGCGCCCCACCA
CAGCGCCTCCCCAACGGCGCTGGTGGGTGGCGGCAGCAACCCGCGGCCCGGGGAAATTTCCCTGGCGCACCGCGGTGTGC
TGTTCCTCGATGAGATGCCGGAATTCCCCCGGCATGCGCTCGAACTGCTGCGGGAGCCATTGGAAAACGGCGAGGTGCGT
CTTTCCCGCGCCCGCGCCCAGGTGACTTATCCGGCCCGTTTCCAGCTGGTCGGGGCCATGAACCCCTGTCCCTGTGGCTA
TCTGGGCGAATCCCGTTGCCGCTGCACGCCGGATCAGATTGACCGCTATCGCAACAAACTCTCTGGACCACTGCTGGACC
GGATCGACATGCAGGTGGAAGTGGCAAGCATGAACGCGGCCGAGCTGCAGGAGGCACCCGCTGGCGAGTCTTCCGAAACC
GTGCGTGCACGAGTGCTGGCCGCGCGTGAGCGGCAACTGACGCGTCAGGGGGTAGTGAATGCGCAACTGGCAGGTAGTGC
ACTGGAACAACACTGCGCACTGGGCAAGAGTGAAGCGGCCATGCTGCGAAACTCGGTCACTCAGCTGGGGCTCTCCGCCC
GCTCCTATCACCGGGTACTGAGAGTGGCCCGTACCCTGGCCGACCTGGCGGGGATCGCTAACATTGGCACGGCTCAGGTG
GCGGAAGCACTGGCATACCGCAATCTGGATCGCCGACCAGCTACGGTCGGCGCCTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (189-388)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (395-487)

• Subunit ChlI of Mg-chelatase (ChlI) (21-141)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.533	99.799	0.554
comM	Vibrio campbellii strain DS40M4	54.217	100	0.542
comM	Glaesserella parasuis strain SC1401	53.082	100	0.536
comM	Haemophilus influenzae Rd KW20	51.896	100	0.522
comM	Legionella pneumophila str. Paris	49.2	100	0.494
comM	Legionella pneumophila strain ERS1305867	49.2	100	0.494
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.834	100	0.462