Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AV541_RS10100 Genome accession   NZ_CP014141
Coordinates   1853403..1854887 (-) Length   494 a.a.
NCBI ID   WP_060384798.1    Uniprot ID   A0A0X8DDN2
Organism   Thermus parvatiensis strain RL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1848403..1859887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV541_RS10080 (AV541_10085) - 1848690..1849169 (-) 480 WP_008630592.1 DUF4384 domain-containing protein -
  AV541_RS10085 (AV541_10090) - 1849209..1849821 (-) 613 Protein_2025 ribonuclease HII -
  AV541_RS10090 (AV541_10095) - 1849846..1851390 (+) 1545 Protein_2026 polyhydroxybutyrate depolymerase -
  AV541_RS10095 (AV541_10100) - 1851395..1853406 (+) 2012 Protein_2027 molybdopterin oxidoreductase family protein -
  AV541_RS10100 (AV541_10105) comM 1853403..1854887 (-) 1485 WP_060384798.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AV541_RS10105 (AV541_10110) - 1855097..1856240 (-) 1144 Protein_2029 MFS transporter -
  AV541_RS10110 (AV541_10115) - 1856242..1857053 (-) 812 Protein_2030 EamA family transporter -
  AV541_RS10115 (AV541_10120) - 1857050..1857944 (-) 895 Protein_2031 DMT family transporter -
  AV541_RS10120 (AV541_10125) - 1858056..1859183 (+) 1128 WP_060384799.1 NAD(P) transhydrogenase subunit alpha -
  AV541_RS10125 (AV541_10130) - 1859183..1859485 (+) 303 WP_008630585.1 proton-translocating transhydrogenase family protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52823.16 Da        Isoelectric Point: 8.1583

>NTDB_id=168683 AV541_RS10100 WP_060384798.1 1853403..1854887(-) (comM) [Thermus parvatiensis strain RL]
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALAPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGQALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=168683 AV541_RS10100 WP_060384798.1 1853403..1854887(-) (comM) [Thermus parvatiensis strain RL]
ATGTTAGCCCAGGTGCGGAGCTACGCCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGACGTTAGCCCGGG
GCTTCCCAGCTACGCCCTGGTGGGCCTGCCCGACAAGGCGGTGGAGGAAAGCCGGGAGAGGGTGCGGGCGGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTTCGGAAGGAGGGGAGCCAGTTT
GACCTTCCCATCGCCCTGGGCCTCCTCGCGGCCCAGGGGGTGGTGCCCCTCGAGGCCCTTGCGCCCTTCGCCCTCGCGGG
GGAGCTTGGCTTGGACGGGAGCCTGAGGCCCGTTCCCGGGGCGGTGAACCTGGCCCTGGGGGCCCTGGCCGAGGGGAAGA
AGCTCCTCCTGCCCCTGGAGAGCGCCAAGGAGGCGGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGCGAGAAGCCTCCAG
GAAGCCGTGGCCTTCCTCAAGGGCGAGGAGGCCTTGGCCGAGGCCCGGCCCGAGGAGGCCCCGGAAGCGGTGGAGGCGCT
GGACCTCAGGGACGTGAAGGGCCAGGCCAAGGCCAAGCGCGCTCTGGAGATCGCCGCCGCGGGCTTCCACCACCTCCTCA
TGGTGGGGAGCCCGGGTTCGGGGAAGACCATGCTGGCGCGGCGGCTTCCCTTCCTCCTCCCGCCCCTCTCCCGGGAGGAG
GCCTTGGAGGTGACCCGGATCCACTCCGCCGCGGGGAAGCCGGTGCGGGGGCTTGTGAAGGCCCCGCCCTTCCGCGCCCC
GCACCACACGGTGAGCTACGCTGGGCTCATCGGGGGTGGGGCCATTCCCAAGCCCGGGGAGGTCTCCTTGGCCCACCGGG
GGGTGCTCTTTCTGGACGAGTTCCCGGAGTTTTCCCGGGAGGCCCTCGAGGCCCTGCGCCAGCCCCTGGAGGACGGGGTG
GTGACCGTGGCACGGGCCCGGGCAAGCCTCACCTTCCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGCACGGGGACCCGGAAAGGCCTTGCACCTGCACCCCCGCCGCCCAGAGGCGCTACGCGGCCAGGATCTCCGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCCTCACCCCCGAGGAGCTCGCCCGCGCCCCCGAGGGGGAG
GGCACGGAGGCGGTGCGGGAGCGGGTCCTAAGGGCCCGGGAGCGGATGCTCGCCCGCCAAGGGAGGCCCAACGGGCTCCT
CTCGGGGCAGGCCCTGAGGGAGCACGCCCGCCTCACCCCACCGGCCCAGGCCCTCCTCCAGGAGGCGGCCAAGCGGATGC
TCCTTTCGGCCCGGAGCTACGACCGCGTCCTCCGGGTGGCCCGCACCGTCGCCGACCTCCTGGGCGAGGAGAGGGTGGGG
GAGGCCCACGTGGCCGAGGCCCTGGCCTACCGCAGGGCCCTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8DDN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.381

100

0.484
  comM Haemophilus influenzae Rd KW20

47.39

100

0.478
  comM Glaesserella parasuis strain SC1401

46.23

100

0.472
  comM Vibrio campbellii strain DS40M4

46.356

100

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

100

0.46
  comM Legionella pneumophila str. Paris

44.89

100

0.453
  comM Legionella pneumophila strain ERS1305867

44.89

100

0.453

Multiple sequence alignment