Detailed information NTG0168671

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: AV541_RS03810
• Genome accession: NZ_CP014141
• Coordinates: 666193..668466 (-)
• Length: 757 a.a.
• NCBI ID: WP_060384270.1
• Uniprot ID: A0A0X8D907
• Organism: Thermus parvatiensis strain RL
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 661193..673466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AV541_RS03780 (AV541_03785)	-	661195..661557 (+)	363	WP_008632880.1	DUF4870 domain-containing protein	-
AV541_RS03785 (AV541_03790)	-	661535..661912 (-)	378	WP_008632879.1	4'-phosphopantetheinyl transferase superfamily protein	-
AV541_RS03790 (AV541_03795)	rsmF	661965..663334 (+)	1370	Protein_751	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	-
AV541_RS03795 (AV541_03800)	-	663380..664426 (-)	1047	WP_011228641.1	3-dehydroquinate synthase	-
AV541_RS03800 (AV541_03805)	-	664404..664958 (-)	555	WP_060384268.1	shikimate kinase	-
AV541_RS03805 (AV541_03810)	aroC	664983..666134 (-)	1152	WP_060384269.1	chorismate synthase	-
AV541_RS03810 (AV541_03815)	pilQ	666193..668466 (-)	2274	WP_060384270.1	secretin N-terminal domain-containing protein	Machinery gene
AV541_RS13515	pilW	668463..668720 (-)	258	WP_244880586.1	hypothetical protein	Machinery gene
AV541_RS03815 (AV541_03820)	pilW	668717..669313 (-)	597	WP_244880587.1	hypothetical protein	Machinery gene
AV541_RS03820 (AV541_03825)	pilO	669310..669891 (-)	582	WP_060384271.1	type 4a pilus biogenesis protein PilO	Machinery gene
AV541_RS03825 (AV541_03830)	pilN	669881..670504 (-)	624	WP_060384272.1	hypothetical protein	Machinery gene
AV541_RS03830 (AV541_03835)	pilM	670497..671630 (-)	1134	WP_060384273.1	type IV pilus assembly protein PilM	Machinery gene
AV541_RS03835 (AV541_03840)	-	671761..672765 (-)	1005	WP_060384274.1	homoisocitrate dehydrogenase	-
AV541_RS03840 (AV541_03845)	-	672820..673311 (-)	492	WP_060384275.1	DUF5317 family protein	-

Sequence

Protein

• Length: 757 a.a.
• Molecular weight: 82778.80 Da
• Isoelectric Point: 5.1469

>NTDB_id=168671 AV541_RS03810 WP_060384270.1 666193..668466(-) (pilQ) [Thermus parvatiensis strain RL]
MKSAWIRAAVIALAGLGAFALAGSFPEEPRFQAPVNLKVSESQVKAGQTLPLDVVLEALARSVGLQPLIYRAYDTSGDPA
KAEPPLPNVKLDFQGKPFREVWDLLFATYGTQFNLDYLFLPPDVVVVAPTQVITALVDAPSRTGAMERRPYIVGVPEIAY
KRTETDAQGQTRTVVNIEGAKAWVQNDLLPFLSREAAGLNVNWIVVEEGGRLKAVLSVLATPEQHARFSDILQRAGIDFR
PLPALAQPKPRVEKTYTLTYATFPELLAFLQSRLPEAQISVVPTNPQRAIVLATEEDHARLAELLKTADVPKTVRRVYAL
QNLTFREAQERLKPLLEKDLKGARLESLPGNPKALLLEAPEAEHALFAEILKALDVPPQAPQAPQEATLRRLYPLRYANA
EQVAPFLAREVPGIVVQTVPGQPVLSVRGTEKQLAEVESLLAQIDRAPEQGPPVFQRAYQLSNAKAVELAQVLQEALKAR
QAQNQGQQNQAPPTREATVVADPRTNTLIVTGTQEDLALVEGLIPKLDQPVPQVSLRVRIQEVQSNLTRSLGLKWNSIAG
GNAAASILDSGLSLIFDSTRSLAALNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQVERVPFD
VGLIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGETVVLGGLTSQESNQSQQGVPLLMD
IPLIGELFKQRTNERTDKELLVVITADILEETASANP

Nucleotide

• Length: 2274 bp

>NTDB_id=168671 AV541_RS03810 WP_060384270.1 666193..668466(-) (pilQ) [Thermus parvatiensis strain RL]
ATGAAGAGCGCGTGGATCCGTGCGGCCGTGATCGCCCTCGCAGGGCTAGGGGCTTTTGCCCTTGCGGGGAGCTTTCCCGA
GGAGCCCCGCTTCCAGGCCCCGGTGAACCTCAAGGTCTCGGAATCCCAGGTCAAGGCAGGCCAGACCCTGCCCCTGGACG
TGGTCCTCGAGGCCCTGGCAAGGAGCGTGGGGCTCCAGCCCCTCATCTACCGGGCCTACGATACAAGCGGGGACCCCGCC
AAGGCAGAGCCCCCCCTCCCCAACGTCAAGCTGGACTTCCAGGGCAAGCCCTTCCGGGAGGTCTGGGACCTCCTCTTCGC
CACCTACGGCACCCAATTCAACCTGGACTACCTCTTCCTGCCCCCCGACGTGGTGGTGGTGGCCCCCACCCAGGTGATCA
CCGCCTTGGTGGACGCCCCGAGCCGCACGGGGGCCATGGAGCGGAGGCCCTACATCGTGGGCGTCCCCGAGATCGCCTAC
AAGCGCACGGAGACGGACGCCCAGGGCCAGACCCGCACGGTCGTCAACATTGAGGGCGCCAAGGCCTGGGTCCAGAACGA
CCTCCTCCCCTTCCTCTCCCGGGAGGCCGCGGGGCTCAACGTGAACTGGATTGTGGTGGAGGAGGGCGGGAGGCTCAAGG
CCGTTCTCTCCGTTCTCGCCACCCCCGAGCAACACGCCCGCTTCTCCGACATCCTGCAACGGGCCGGGATTGACTTCCGC
CCCCTCCCCGCCCTGGCCCAGCCCAAGCCCCGGGTGGAGAAGACCTACACCCTCACCTACGCCACCTTCCCCGAACTCCT
CGCCTTCCTCCAGTCCCGCCTCCCCGAAGCCCAGATCAGCGTGGTTCCCACCAACCCCCAAAGGGCCATCGTCCTCGCCA
CCGAGGAGGACCACGCCCGCCTCGCTGAGCTTCTGAAGACGGCCGACGTCCCCAAGACCGTCCGCCGGGTCTACGCCCTG
CAGAACCTCACCTTCAGGGAGGCCCAGGAGCGCCTAAAGCCCCTCCTGGAGAAGGACCTCAAGGGGGCCCGCCTGGAGAG
CCTCCCCGGCAATCCCAAGGCCCTCCTCCTCGAGGCTCCCGAGGCGGAGCACGCCCTCTTCGCCGAGATCCTAAAAGCCC
TGGACGTCCCTCCCCAGGCCCCTCAGGCTCCCCAGGAGGCCACCTTGCGCCGCCTTTACCCCTTGCGCTACGCCAACGCC
GAGCAGGTGGCCCCCTTCCTCGCCCGGGAGGTGCCGGGGATCGTGGTCCAGACCGTTCCCGGCCAGCCCGTCCTCTCGGT
GCGGGGCACGGAGAAGCAGCTCGCCGAGGTGGAAAGCCTCCTCGCCCAGATTGACCGGGCCCCCGAGCAAGGCCCTCCCG
TGTTCCAGCGGGCCTACCAGCTCTCCAACGCCAAGGCGGTGGAGCTCGCCCAGGTGCTCCAGGAAGCGCTCAAAGCCCGG
CAGGCCCAGAACCAGGGCCAGCAGAACCAGGCCCCCCCCACCCGGGAGGCCACGGTGGTGGCCGACCCCAGGACCAACAC
CCTCATCGTCACCGGCACCCAGGAGGACCTCGCCCTGGTGGAGGGCCTCATTCCCAAGCTGGACCAGCCCGTTCCCCAGG
TTTCCTTGCGGGTGCGCATCCAGGAGGTCCAGTCCAACCTGACCCGTAGTCTCGGCCTCAAGTGGAACAGCATCGCTGGC
GGCAATGCGGCGGCCAGCATCCTGGACTCGGGGCTTTCCCTCATCTTTGACTCCACGCGAAGCCTCGCCGCCCTCAACAT
CATGGCCACCCTGGATGCCCTGCAGCAACAGGGGCTTTCCCGGGCCCTCCGGGATGTGAACCAGACCGTCCTCAACAACC
AGACCGCCCGCCTGCAATCGGGGGAAACCTTCTTCATCCGGCGGGTGGTAAACGACCAGGTGGAACGGGTCCCCTTTGAT
GTGGGTCTTATCGTGGAGGTCACGCCCCAGATCACCGCCGACGGCCAGATCCTCCTCAACATCAAGGCCGAGGTCTCGGG
GAACGTCCAGCGCAACCCCGTGGACGGGGATGTGGACCGCTTCACCAAGCAGGTGGTGACCACCACCCTCAGGGTAAGGG
ACGGGGAGACCGTGGTCCTTGGGGGCCTCACCTCCCAGGAGTCCAACCAGAGCCAGCAGGGGGTGCCCCTCCTCATGGAC
ATCCCCCTGATCGGGGAACTTTTCAAGCAGCGGACGAACGAGCGCACCGACAAGGAGCTTTTGGTGGTGATCACCGCCGA
CATCCTCGAGGAGACGGCCTCGGCGAACCCCTAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (391-450)

• Bacterial type II/III secretion system short domain (Secretin_N) (457-533)

• Bacterial type II and III secretion system protein (Secretin) (593-749)

3D structure

• AlphaFold DB: A0A0X8D907

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Thermus thermophilus HB27	96.962	100	0.97