Detailed information
Bioinformatically predicted
Overview
| Name | pilW | Type | Machinery gene |
| Locus tag | AV541_RS03815 | Genome accession | NZ_CP014141 |
| Coordinates | 668717..669313 (-) | Length | 198 a.a. |
| NCBI ID | WP_244880587.1 | Uniprot ID | - |
| Organism | Thermus parvatiensis strain RL | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 663717..674313
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AV541_RS03800 (AV541_03805) | - | 664404..664958 (-) | 555 | WP_060384268.1 | shikimate kinase | - |
| AV541_RS03805 (AV541_03810) | aroC | 664983..666134 (-) | 1152 | WP_060384269.1 | chorismate synthase | - |
| AV541_RS03810 (AV541_03815) | pilQ | 666193..668466 (-) | 2274 | WP_060384270.1 | secretin N-terminal domain-containing protein | Machinery gene |
| AV541_RS13515 | pilW | 668463..668720 (-) | 258 | WP_244880586.1 | hypothetical protein | Machinery gene |
| AV541_RS03815 (AV541_03820) | pilW | 668717..669313 (-) | 597 | WP_244880587.1 | hypothetical protein | Machinery gene |
| AV541_RS03820 (AV541_03825) | pilO | 669310..669891 (-) | 582 | WP_060384271.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AV541_RS03825 (AV541_03830) | pilN | 669881..670504 (-) | 624 | WP_060384272.1 | hypothetical protein | Machinery gene |
| AV541_RS03830 (AV541_03835) | pilM | 670497..671630 (-) | 1134 | WP_060384273.1 | type IV pilus assembly protein PilM | Machinery gene |
| AV541_RS03835 (AV541_03840) | - | 671761..672765 (-) | 1005 | WP_060384274.1 | homoisocitrate dehydrogenase | - |
| AV541_RS03840 (AV541_03845) | - | 672820..673311 (-) | 492 | WP_060384275.1 | DUF5317 family protein | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21147.54 Da Isoelectric Point: 11.8459
>NTDB_id=168672 AV541_RS03815 WP_244880587.1 668717..669313(-) (pilW) [Thermus parvatiensis strain RL]
MKNAWQRLKEAWANLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAEAPTPAPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPTPVPEGPAVRVQTPAPAPRRPPPPSPSPGPPAPSRHPRS
SPPPWLPPCPRRPGRRRLRSPCPRRSWRPPFPGPRQKG
MKNAWQRLKEAWANLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAEAPTPAPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPTPVPEGPAVRVQTPAPAPRRPPPPSPSPGPPAPSRHPRS
SPPPWLPPCPRRPGRRRLRSPCPRRSWRPPFPGPRQKG
Nucleotide
Download Length: 597 bp
>NTDB_id=168672 AV541_RS03815 WP_244880587.1 668717..669313(-) (pilW) [Thermus parvatiensis strain RL]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGCCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCCCGCCCGCCCCCGTGGCCCGGGCCGAGCCCCCGCCCCCGAACCCCTTCGTCCCCCTGGT
GGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCACGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGA
CCCCCGCCCCGGCCCCCAGGCGGCCCCCGCCACCCAGCCCATCCCCGGGACCTCCGGCGCCCTCCCGGCACCCAAGGTCC
TCTCCCCCGCCCTGGCTGCCCCCCTGCCCCAGGAGGCCAGGGAGACGCCGCCTAAGGTCGCCGTGCCCACGGCGCTCGTG
GAGACCCCCCTTTCCGGGCCCGAGGCAGAAGGGGTGA
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGCCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCCCGCCCGCCCCCGTGGCCCGGGCCGAGCCCCCGCCCCCGAACCCCTTCGTCCCCCTGGT
GGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCACGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGA
CCCCCGCCCCGGCCCCCAGGCGGCCCCCGCCACCCAGCCCATCCCCGGGACCTCCGGCGCCCTCCCGGCACCCAAGGTCC
TCTCCCCCGCCCTGGCTGCCCCCCTGCCCCAGGAGGCCAGGGAGACGCCGCCTAAGGTCGCCGTGCCCACGGCGCTCGTG
GAGACCCCCCTTTCCGGGCCCGAGGCAGAAGGGGTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilW | Thermus thermophilus HB27 |
72.381 |
100 |
0.768 |