Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AV541_RS03825 | Genome accession | NZ_CP014141 |
| Coordinates | 669881..670504 (-) | Length | 207 a.a. |
| NCBI ID | WP_060384272.1 | Uniprot ID | A0A0X8D8R3 |
| Organism | Thermus parvatiensis strain RL | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 664881..675504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AV541_RS03805 (AV541_03810) | aroC | 664983..666134 (-) | 1152 | WP_060384269.1 | chorismate synthase | - |
| AV541_RS03810 (AV541_03815) | pilQ | 666193..668466 (-) | 2274 | WP_060384270.1 | secretin N-terminal domain-containing protein | Machinery gene |
| AV541_RS13515 | pilW | 668463..668720 (-) | 258 | WP_244880586.1 | hypothetical protein | Machinery gene |
| AV541_RS03815 (AV541_03820) | pilW | 668717..669313 (-) | 597 | WP_244880587.1 | hypothetical protein | Machinery gene |
| AV541_RS03820 (AV541_03825) | pilO | 669310..669891 (-) | 582 | WP_060384271.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AV541_RS03825 (AV541_03830) | pilN | 669881..670504 (-) | 624 | WP_060384272.1 | hypothetical protein | Machinery gene |
| AV541_RS03830 (AV541_03835) | pilM | 670497..671630 (-) | 1134 | WP_060384273.1 | type IV pilus assembly protein PilM | Machinery gene |
| AV541_RS03835 (AV541_03840) | - | 671761..672765 (-) | 1005 | WP_060384274.1 | homoisocitrate dehydrogenase | - |
| AV541_RS03840 (AV541_03845) | - | 672820..673311 (-) | 492 | WP_060384275.1 | DUF5317 family protein | - |
| AV541_RS03845 (AV541_03850) | - | 673362..674813 (-) | 1452 | WP_060384276.1 | HD-GYP domain-containing protein | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23021.52 Da Isoelectric Point: 9.7304
>NTDB_id=168674 AV541_RS03825 WP_060384272.1 669881..670504(-) (pilN) [Thermus parvatiensis strain RL]
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPKAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRVRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGVTGGESGAR
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPKAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRVRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGVTGGESGAR
Nucleotide
Download Length: 624 bp
>NTDB_id=168674 AV541_RS03825 WP_060384272.1 669881..670504(-) (pilN) [Thermus parvatiensis strain RL]
TTGATTAGGCTGAACCTTCTTCCCAAGAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTTTCCCTGGCCAAGGCGGAACGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTCCAGGAGGAGCGCAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAAGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAAGGCACCTACGACGGCAAACGGGTTCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGCGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGTGACGGGGGGTGAAAGCGGTGCTCGCTAG
TTGATTAGGCTGAACCTTCTTCCCAAGAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTTTCCCTGGCCAAGGCGGAACGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTCCAGGAGGAGCGCAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAAGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAAGGCACCTACGACGGCAAACGGGTTCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGCGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGTGACGGGGGGTGAAAGCGGTGCTCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Thermus thermophilus HB27 |
98.551 |
100 |
0.986 |