Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACH33_RS00480 Genome accession   NZ_CP014140
Coordinates   91632..92096 (+) Length   154 a.a.
NCBI ID   WP_057900188.1    Uniprot ID   A0A0X8D601
Organism   Aneurinibacillus sp. XH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 86632..97096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH33_RS00450 (ACH33_00455) yyaC 87072..87713 (-) 642 WP_057897235.1 spore protease YyaC -
  ACH33_RS00455 (ACH33_00460) - 88174..88446 (+) 273 WP_057900187.1 DUF3343 domain-containing protein -
  ACH33_RS00460 (ACH33_00465) - 88482..89405 (+) 924 WP_057897236.1 mechanosensitive ion channel family protein -
  ACH33_RS00465 (ACH33_00470) - 89431..89634 (+) 204 WP_057897237.1 DUF951 domain-containing protein -
  ACH33_RS18955 - 89677..89826 (-) 150 WP_156423976.1 hypothetical protein -
  ACH33_RS00470 (ACH33_00475) ychF 89959..91065 (+) 1107 WP_057897238.1 redox-regulated ATPase YchF -
  ACH33_RS00475 (ACH33_00480) rpsF 91314..91604 (+) 291 WP_057897239.1 30S ribosomal protein S6 -
  ACH33_RS00480 (ACH33_00485) ssbA 91632..92096 (+) 465 WP_057900188.1 single-stranded DNA-binding protein Machinery gene
  ACH33_RS00485 (ACH33_00490) rpsR 92137..92367 (+) 231 WP_057897240.1 30S ribosomal protein S18 -
  ACH33_RS00490 (ACH33_00495) - 92507..93499 (+) 993 WP_057897241.1 DUF2232 domain-containing protein -
  ACH33_RS00495 (ACH33_00500) - 93514..95475 (+) 1962 WP_057897242.1 DHH family phosphoesterase -
  ACH33_RS00500 (ACH33_00505) rplI 95472..95915 (+) 444 WP_057897243.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17381.22 Da        Isoelectric Point: 4.6972

>NTDB_id=168638 ACH33_RS00480 WP_057900188.1 91632..92096(+) (ssbA) [Aneurinibacillus sp. XH2]
MNRVVLLGRLTKDPELRYTPNGTAVVTFTLAVDRRMTNQQGERETDFLPIVVWSKLAELCAQYLKKGQQAAVEGRIQVRN
YENKEGRRVYVTEIIADNVQFLGGRQGQSSDESYSSGFERSAGFDGGHSRDSFDDNPFANDQRPIDISDDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=168638 ACH33_RS00480 WP_057900188.1 91632..92096(+) (ssbA) [Aneurinibacillus sp. XH2]
TTGAATCGTGTGGTATTGTTAGGGCGTTTAACCAAAGATCCCGAACTCCGCTATACGCCGAACGGAACTGCTGTAGTTAC
CTTTACGCTTGCGGTTGATCGTCGAATGACAAATCAACAGGGCGAAAGAGAAACCGACTTTCTTCCTATTGTTGTATGGA
GCAAGTTGGCTGAATTATGCGCCCAATACCTGAAAAAAGGGCAGCAAGCCGCTGTGGAAGGACGCATTCAGGTGCGTAAC
TACGAAAATAAGGAAGGACGTCGCGTATATGTTACGGAAATCATTGCAGATAATGTGCAATTCTTAGGCGGTAGACAAGG
CCAAAGCAGCGACGAATCATACTCCAGCGGATTTGAGAGGTCGGCGGGTTTTGATGGCGGACATTCTCGCGATTCGTTTG
ACGATAATCCCTTTGCTAACGATCAGAGACCGATCGATATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8D601

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.386

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

45.562

100

0.5
  ssb Neisseria meningitidis MC58

35.465

100

0.396
  ssb Neisseria gonorrhoeae MS11

35.465

100

0.396
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.377

Multiple sequence alignment