Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL539_RS12085 Genome accession   NZ_CP014053
Coordinates   2217150..2218673 (-) Length   507 a.a.
NCBI ID   WP_005383862.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_108     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2212150..2223673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL539_RS12065 (AL539_20295) - 2213440..2214426 (+) 987 WP_104976032.1 serine/threonine protein kinase -
  AL539_RS12070 (AL539_20300) - 2214461..2215063 (+) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  AL539_RS12075 (AL539_20305) - 2215110..2215988 (-) 879 WP_017821568.1 acyltransferase -
  AL539_RS12080 (AL539_20310) - 2216138..2217094 (+) 957 WP_104975718.1 DUF2860 domain-containing protein -
  AL539_RS12085 (AL539_20315) comM 2217150..2218673 (-) 1524 WP_005383862.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL539_RS12090 (AL539_20320) ilvG 2219139..2220785 (+) 1647 WP_005378960.1 acetolactate synthase 2 catalytic subunit -
  AL539_RS12095 (AL539_20325) ilvM 2220797..2221081 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  AL539_RS12100 (AL539_20330) ilvE 2221094..2222032 (+) 939 WP_025768922.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55007.10 Da        Isoelectric Point: 9.0584

>NTDB_id=168092 AL539_RS12085 WP_005383862.1 2217150..2218673(-) (comM) [Vibrio alginolyticus strain FDAARGOS_108]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKTIEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKARVSHARNNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=168092 AL539_RS12085 WP_005383862.1 2217150..2218673(-) (comM) [Vibrio alginolyticus strain FDAARGOS_108]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATCAGCAA
CGGCATGCCAGGGTTTACCTTAGTAGGCTTGCCAGAGACAACGGTAAAAGAGTCCAAAGATCGCGTACGCAGTGCGATCA
TTAATTCTAACTTTCAATTTCCTGCTAAGCGGATCACCGTGAACTTGGCTCCGGCAGATCTACCCAAGGAGGGAGGGCGT
TTTGATCTTCCTATTGCATTGGGAATTTTGGCCGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTGGCGCTATCTGGTGGTCTAAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTGGTCGTCCCACATGTGAATGGCGATCAGGCGGCGCTAGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGCGCCGAGCTTTGTGGTCAACATCGACTGAATCTTTTTCAAACGCCTAAGCGAAAAACGATCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGAGCACTGGAGATTGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACGATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCATAACTGGAAGTCGCGTCCGTT
TCGTTCTCCGCATCATTCAAGTTCAATGGCGGCATTAGTCGGCGGTGGTTCGGTACCCAGACCAGGGGAGATCTCTTTAG
CCCACAACGGGTTATTGTTTCTCGATGAAATGCCCGAATTTGATCGTAAAGTTCTAGACTCGTTACGCGAACCGCTCGAA
TCTGGCGAGATCATTATCTCTCGAGCGCAAGGTAAAACACGCTTTCCGGCTCGCTTCCAATTAGTTGGAGCATTGAACCC
AAGCCCGACAGGATATTACGAAGGCAATCAAGCGCGCACCAATCCACAAGCTATTTTGCGCTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGAGGTGATCGT
GGTGAGCCGACTGCTATCGTAAAAGCGCGTGTGAGCCATGCGCGTAACAATATGCTAAACCGCAGTGGTAAGGTCAATGC
ACTGCTAGGTAGTCGAGAAATTGAGGCGTTTTGTCCCTTGCATAAGAGTGATGCTGAGTTTCTTGAAACCGCTTTGCATC
GTTTAGGGCTCTCGATTCGTGCGTATCATCGTATTATCAAAGTGGCGCGAACAATCGCCGATCTGGATGGGGCGGAGCAA
ATTGAACGAACGCACTTGGCCGAGGCACTTGGGTATCGAGCGATGGACCGTTTACTGAAACAGCTTACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.477

100

0.945
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

99.803

0.434

Multiple sequence alignment