Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL549_RS21900 Genome accession   NZ_CP014049
Coordinates   2856514..2858037 (+) Length   507 a.a.
NCBI ID   WP_045623569.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_119     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2851514..2863037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL549_RS21885 (AL549_20320) ilvE 2853152..2854090 (-) 939 WP_061059012.1 branched-chain-amino-acid transaminase -
  AL549_RS21890 (AL549_20325) ilvM 2854102..2854386 (-) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  AL549_RS21895 (AL549_20330) ilvG 2854398..2856044 (-) 1647 WP_011151435.1 acetolactate synthase 2 catalytic subunit -
  AL549_RS21900 (AL549_20335) comM 2856514..2858037 (+) 1524 WP_045623569.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL549_RS21905 (AL549_20340) - 2858076..2859050 (-) 975 WP_045623571.1 DUF2860 domain-containing protein -
  AL549_RS21910 (AL549_20345) - 2859193..2860074 (+) 882 WP_061059013.1 acyltransferase -
  AL549_RS21915 (AL549_20350) - 2860128..2860733 (-) 606 WP_061059014.1 thiol:disulfide interchange protein DsbA/DsbL -
  AL549_RS21920 (AL549_20355) - 2860766..2861752 (-) 987 WP_061059015.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54695.82 Da        Isoelectric Point: 9.1030

>NTDB_id=168037 AL549_RS21900 WP_045623569.1 2856514..2858037(+) (comM) [Vibrio vulnificus strain FDAARGOS_119]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKARVAQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=168037 AL549_RS21900 WP_045623569.1 2856514..2858037(+) (comM) [Vibrio vulnificus strain FDAARGOS_119]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTAGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTCCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAACAACATGAATTTGT
CGGTGAGTTGGCCTTAAGTGGTGAGCTACGAGCAGTGAAAGGGGTTTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGTAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
CAGTCGAGATTTGCAAGACATCATTGGTCAGCAACAAGGAAAGCGAGCGCTAGAAATTGCAGCAGCAGGCAATCACAATT
TATTGTTTTTAGGGCCTCCAGGGACGGGTAAAACCATGCTGGCGTCACGTTTGCGAGATCTGCTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCTGGAGAAATCTCACTCG
CACACAACGGCTTACTGTTTTTGGACGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATTATCATTTCACGAGCGCAAGGTAAAACCCGTTTTCCTGCTCGCTTTCAGTTGGTTGGAGCGCTGAATCC
GAGCCCCACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGCTTATCGG
GCCCACTGTTGGATCGTTTTGATATGTCACTCGAGATCCCTGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGACCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGCGCAGGCGAGAGAGCGAATGCAGCATCGTAATGGCAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATCATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCACGCGTGCGCATTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.968

100

0.88
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.846

99.803

0.627
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment