Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AL549_RS09870 | Genome accession | NZ_CP014049 |
| Coordinates | 541205..541507 (+) | Length | 100 a.a. |
| NCBI ID | WP_011078144.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FDAARGOS_119 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 536205..546507
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL549_RS09855 (AL549_09690) | lon | 536219..538570 (+) | 2352 | WP_011078147.1 | endopeptidase La | - |
| AL549_RS09860 (AL549_09695) | - | 538764..539036 (+) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| AL549_RS09865 (AL549_09700) | ppiD | 539213..541072 (+) | 1860 | WP_013572180.1 | peptidylprolyl isomerase | - |
| AL549_RS09870 (AL549_09705) | comEA | 541205..541507 (+) | 303 | WP_011078144.1 | ComEA family DNA-binding protein | Machinery gene |
| AL549_RS09875 (AL549_09710) | rrtA | 541554..542138 (-) | 585 | WP_011078143.1 | rhombosortase | - |
| AL549_RS09880 (AL549_09715) | - | 542118..542726 (+) | 609 | WP_013572177.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| AL549_RS09885 (AL549_09720) | - | 542748..544079 (-) | 1332 | WP_011078141.1 | anti-phage deoxyguanosine triphosphatase | - |
| AL549_RS09890 (AL549_09725) | yfbR | 544085..544633 (-) | 549 | WP_231846899.1 | 5'-deoxynucleotidase | - |
| AL549_RS09895 (AL549_09730) | - | 544750..545964 (-) | 1215 | WP_011080966.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10866.71 Da Isoelectric Point: 9.6573
>NTDB_id=168005 AL549_RS09870 WP_011078144.1 541205..541507(+) (comEA) [Vibrio vulnificus strain FDAARGOS_119]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=168005 AL549_RS09870 WP_011078144.1 541205..541507(+) (comEA) [Vibrio vulnificus strain FDAARGOS_119]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59 |
100 |
0.59 |
| comEA | Vibrio campbellii strain DS40M4 |
54 |
100 |
0.54 |
| comEA | Vibrio cholerae C6706 |
52.041 |
98 |
0.51 |
| comEA | Vibrio cholerae strain A1552 |
52.041 |
98 |
0.51 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60 |
0.36 |