Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AL543_RS19675 Genome accession   NZ_CP014043
Coordinates   2758688..2758999 (-) Length   103 a.a.
NCBI ID   WP_001159858.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2753688..2763999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS19650 (AL543_18840) lapB 2753917..2755086 (-) 1170 WP_061052859.1 lipopolysaccharide assembly protein LapB -
  AL543_RS19655 (AL543_18845) - 2755099..2755380 (-) 282 WP_000691486.1 LapA family protein -
  AL543_RS19660 (AL543_18850) ihfB 2755525..2755803 (-) 279 WP_000167340.1 integration host factor subunit beta -
  AL543_RS19665 (AL543_18855) rpsA 2756056..2757726 (-) 1671 WP_000140311.1 30S ribosomal protein S1 -
  AL543_RS19670 (AL543_18860) cmk 2757835..2758512 (-) 678 WP_000100580.1 (d)CMP kinase -
  AL543_RS19675 (AL543_18865) comEA 2758688..2758999 (-) 312 WP_001159858.1 ComEA family DNA-binding protein Machinery gene
  AL543_RS19685 (AL543_18870) ppiD 2759135..2760994 (-) 1860 WP_061052860.1 peptidylprolyl isomerase -
  AL543_RS19690 (AL543_18875) - 2761147..2761419 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  AL543_RS19695 (AL543_18880) lon 2761595..2763964 (-) 2370 WP_001047616.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11031.89 Da        Isoelectric Point: 4.7228

>NTDB_id=167902 AL543_RS19675 WP_001159858.1 2758688..2758999(-) (comEA) [Vibrio mimicus strain FDAARGOS_112]
MQFKTTLMTVLLSLCLPAMPMLVSAEETNPTAQTEEGIVITVNVNTASAEELATLLKGIGLKKAQAIVDYREANGPFISI
DDLTKVKGIGEATVRNNATRILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=167902 AL543_RS19675 WP_001159858.1 2758688..2758999(-) (comEA) [Vibrio mimicus strain FDAARGOS_112]
ATGCAATTCAAAACAACACTTATGACAGTTCTGCTTTCACTCTGTTTACCAGCCATGCCTATGCTGGTTAGTGCTGAGGA
AACAAACCCGACGGCGCAAACTGAAGAAGGTATTGTCATTACTGTGAATGTCAATACGGCTTCGGCAGAAGAGCTTGCCA
CTTTGCTAAAAGGTATTGGGCTTAAAAAAGCACAGGCGATTGTCGATTATCGTGAGGCTAATGGTCCCTTTATCAGCATC
GACGATCTGACGAAGGTGAAAGGCATTGGTGAAGCAACCGTACGCAACAACGCGACTCGCATATTGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

81.553

100

0.816
  comEA Vibrio cholerae strain A1552

81.553

100

0.816
  comEA Vibrio campbellii strain DS40M4

61.856

94.175

0.583
  comEA Vibrio parahaemolyticus RIMD 2210633

60.417

93.204

0.563
  comE1/comEA Haemophilus influenzae Rd KW20

39.286

100

0.427

Multiple sequence alignment