Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL543_RS11860 Genome accession   NZ_CP014043
Coordinates   1054584..1055117 (+) Length   177 a.a.
NCBI ID   WP_000235464.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1049584..1060117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS11845 (AL543_11115) uvrA 1049625..1052447 (-) 2823 WP_061051992.1 excinuclease ABC subunit UvrA -
  AL543_RS11850 (AL543_11120) galU 1052602..1053474 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL543_RS11855 (AL543_11125) qstR 1053648..1054292 (-) 645 WP_001189892.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL543_RS11860 (AL543_11130) ssb 1054584..1055117 (+) 534 WP_000235464.1 single-stranded DNA-binding protein Machinery gene
  AL543_RS11865 (AL543_11135) csrD 1055295..1057253 (+) 1959 WP_022577500.1 RNase E specificity factor CsrD -
  AL543_RS11870 (AL543_11140) - 1057266..1058705 (+) 1440 WP_061051993.1 hypothetical protein -
  AL543_RS11875 (AL543_11145) gspM 1058702..1059352 (+) 651 WP_061051994.1 type II secretion system protein GspM -
  AL543_RS11880 (AL543_11150) - 1059345..1059662 (+) 318 WP_000252815.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19742.95 Da        Isoelectric Point: 5.7626

>NTDB_id=167882 AL543_RS11860 WP_000235464.1 1054584..1055117(+) (ssb) [Vibrio mimicus strain FDAARGOS_112]
MATRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=167882 AL543_RS11860 WP_000235464.1 1054584..1055117(+) (ssb) [Vibrio mimicus strain FDAARGOS_112]
ATGGCAACCCGTGGCGTAAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACTATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AATGGCACCGCGTGACTCTGTATGGAAAGCTGGCAGAAGTTGCTGGTGAGTATCTGCGTAAAGGTTCTCAAGTCTACATT
GAAGGCCAACTGCAAACTCGTAAGTGGCAAGATCAGAATGGTCAAGATCGCTACTCAACTGAAGTGGTTGTACAAGGCTA
CAACGGCATCATGCAGATGCTAGGTGGTCGTGCCCAACAGGGTGGAATGCCAGCTCAGCAAGGCGGCATGAATGCACCAC
AACAAGGTGGTTGGGGACAACCTCAGCAACCAGCGAAACAGCATCAACCGATGCAACAATCGGCACCTCAGCAGTACTCG
CAACCGCAGTACAACGAGCCACCGATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

96.067

100

0.966
  ssb Glaesserella parasuis strain SC1401

53.297

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492
  ssb Neisseria meningitidis MC58

45.745

100

0.486

Multiple sequence alignment