Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AL543_RS11855 Genome accession   NZ_CP014043
Coordinates   1053648..1054292 (-) Length   214 a.a.
NCBI ID   WP_001189892.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048648..1059292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS11845 (AL543_11115) uvrA 1049625..1052447 (-) 2823 WP_061051992.1 excinuclease ABC subunit UvrA -
  AL543_RS11850 (AL543_11120) galU 1052602..1053474 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL543_RS11855 (AL543_11125) qstR 1053648..1054292 (-) 645 WP_001189892.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL543_RS11860 (AL543_11130) ssb 1054584..1055117 (+) 534 WP_000235464.1 single-stranded DNA-binding protein Machinery gene
  AL543_RS11865 (AL543_11135) csrD 1055295..1057253 (+) 1959 WP_022577500.1 RNase E specificity factor CsrD -
  AL543_RS11870 (AL543_11140) - 1057266..1058705 (+) 1440 WP_061051993.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24758.53 Da        Isoelectric Point: 9.6351

>NTDB_id=167881 AL543_RS11855 WP_001189892.1 1053648..1054292(-) (qstR) [Vibrio mimicus strain FDAARGOS_112]
MQRTNYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENSQIRQQLGPLKLTSPYFE
TILFNVDKRLKTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQTHQTQATVDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=167881 AL543_RS11855 WP_001189892.1 1053648..1054292(-) (qstR) [Vibrio mimicus strain FDAARGOS_112]
ATGCAACGAACCAATTACGCACGCACCATTTACTTGCTGACCACTCAACCCAAAGCTTTACATCCCTCTATTCAGGCGGC
GATAGAACAACTGAATCTTCCCGTCCCTGTGATTGAGCCGGAGCGTTTACTGCGCGAGTATCAATCCGATAAACACAAAA
TTTTGCTGCTCGATCATGCAGAAAACAGCCAGATCCGCCAGCAACTTGGGCCACTCAAGCTCACTAGCCCCTATTTTGAA
ACCATTCTGTTTAATGTGGATAAACGGCTAAAAACTGAAGACCTGCTCACCTTTGGTAACCTAAAAGGGCTTTTTTATGC
CAACGAAGATACTGGTTTTATTGCGCATGGGCTTGGAGAGATTATCAATGGTCAGAACTGGTTACCACGCCACGTAAGCA
GCCAGTTATTACACTACTATCGTTACGCTTTCCAAACCCATCAGACTCAGGCTACGGTTGACCTCACCGCACGTGAAATT
CAAATTCTGCGCTGCCTACAGACCGGAGCTTCAAATATGCAAATTGCAGAGAGTTTGTTTATTAGTGAGTTCACGGTGAA
ATCCCATCTCTATCAGATATTTAAAAAGTTGAATGTGAAAAATCGAGTCAAAGCGATTGCCTGGGTAAACCAAAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

96.262

100

0.963
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.528

Multiple sequence alignment