Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL543_RS10435 Genome accession   NZ_CP014043
Coordinates   757736..759259 (+) Length   507 a.a.
NCBI ID   WP_000521794.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 752736..764259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS10420 (AL543_09665) ilvE 754310..755248 (-) 939 WP_000202000.1 branched-chain-amino-acid transaminase -
  AL543_RS10425 (AL543_09670) ilvM 755260..755544 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  AL543_RS10430 (AL543_09675) ilvG 755556..757202 (-) 1647 WP_000145267.1 acetolactate synthase 2 catalytic subunit -
  AL543_RS10435 (AL543_09680) comM 757736..759259 (+) 1524 WP_000521794.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL543_RS10440 (AL543_09685) - 759350..760231 (+) 882 WP_061051856.1 acyltransferase -
  AL543_RS10445 (AL543_09690) - 760293..760898 (-) 606 WP_000732289.1 thiol:disulfide interchange protein DsbA/DsbL -
  AL543_RS10450 (AL543_09695) - 760930..761916 (-) 987 WP_061051857.1 serine/threonine protein kinase -
  AL543_RS10455 (AL543_09700) ccoG 761964..763388 (-) 1425 WP_061051858.1 cytochrome c oxidase accessory protein CcoG -
  AL543_RS10460 (AL543_09705) - 763652..763918 (-) 267 WP_000649656.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54901.03 Da        Isoelectric Point: 8.6160

>NTDB_id=167878 AL543_RS10435 WP_000521794.1 757736..759259(+) (comM) [Vibrio mimicus strain FDAARGOS_112]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLENYEFIGELALSGEIRGVKGVLPAALAANQVNRCLVVPHSNGDQAALVGSERHKSAQSL
LEVCADLCGQQNLSLFQSAPSVLAVPTTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVLAARERMLVRSGKVNALLQSREIEQYCPLVKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=167878 AL543_RS10435 WP_000521794.1 757736..759259(+) (comM) [Vibrio mimicus strain FDAARGOS_112]
ATGGGACTTGCGATCATTCACAGCCGCGCCAGTATTGGCGTGCAGGCTCCTCCGGTTACGGTTGAGGTTCACATCAGTAA
TGGTATGCCGGGTTTCACCTTGGTTGGTCTGCCGGAAACTACAGTGAAAGAGTCGCGGGATCGAGTTCGTAGCGCGATCA
TTAACTCTCGATTTGAGTTTCCGGCGAAACGCATTACGGTCAATTTAGCCCCTGCCGATCTGCCCAAAGAGGGTGGGCGT
TTTGATCTTCCAATTGCACTTGGAATTTTGGCCGCCTCGGATCAAATTGCGCGAACTAAGCTTGAAAATTACGAATTTAT
CGGTGAATTGGCACTATCGGGTGAGATTCGTGGTGTGAAAGGGGTATTGCCTGCCGCACTCGCTGCTAATCAAGTCAATC
GCTGTTTAGTGGTACCACACAGTAATGGTGATCAGGCTGCGTTGGTGGGGAGTGAACGGCATAAATCTGCGCAAAGCTTA
TTGGAAGTATGTGCCGATCTGTGTGGCCAGCAGAACCTGTCGCTGTTTCAAAGTGCACCAAGTGTGTTGGCGGTGCCAAC
TACCCGCGATTTACAGGATATTATTGGTCAGCAACAGGGTAAGCGTGCGTTGGAAATTGCAGCGGCAGGAAACCATAACC
TGCTGTTTTTAGGTCCTCCGGGTACGGGTAAAACCATGCTTGCTTCGCGCCTGTGCGATTTATTGCCGGAAATGAGTGAC
GAAGAGGCGATGGAAACAGCATCGATCGCGTCCCTCACGCAGCAAGAAATTAACCAACATAACTGGAAATTGCGTCCTTT
TCGTTCGCCACACCATTCAAGCTCAATGGCGGCTTTAGTGGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGTTTGCTGTTTTTGGACGAAATGCCGGAGTTTGAGCGCAAAGTGTTGGATTCACTGCGTGAACCGCTGGAA
TCGGGGGAAATTGTGATTTCTCGTGCGCAAGGTAAAACTCGTTTTCCGGCACGCTTTCAATTGGTTGGCGCGTTAAATCC
AAGCCCAACTGGTTACTACGAGGGTAGTCAGGCTCGTGCCAATCCGCAGAGTATTCTGCGCTATTTGAGTAGGCTCTCTG
GCCCTTTGTTGGATCGCTTTGATATGTCGATAGAGATCCCAGCCTTACCGAAGGGCACCTTGGCCAATGGTGGTGATCGT
GGTGAATCCACCGCGGCTGTGCGTCAGCGAGTGTTGGCTGCTCGGGAGCGAATGCTTGTACGTTCTGGTAAGGTGAATGC
CTTGCTGCAAAGCCGAGAAATTGAACAATATTGTCCTTTGGTCAAAGCCGATGCCGAGTTTTTGGAAAGTGCGCTCCATC
GCTTGGGTTTATCGATTCGTGCTTACCACCGCATCATCAAAGTCGCGCGAACCATTGCTGATTTACAAGGTGAAGCGCAG
ATTGCTCGCCCACATCTGGCGGAGGCGTTAGGTTATCGAGCGATGGATAGGCTACTCAAGCAATTGAGTGCGCAGAATGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

97.041

100

0.97
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

67.456

100

0.675
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

51.21

97.83

0.501
  comM Legionella pneumophila strain ERS1305867

51.21

97.83

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.436

Multiple sequence alignment