Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL538_RS08165 Genome accession   NZ_CP014038
Coordinates   1593448..1593987 (-) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain FDAARGOS_107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1588448..1598987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL538_RS08145 (AL538_07540) - 1588758..1589087 (-) 330 WP_061065404.1 hypothetical protein -
  AL538_RS08150 (AL538_07545) gspM 1589080..1589730 (-) 651 WP_061065405.1 type II secretion system protein GspM -
  AL538_RS08155 (AL538_07550) - 1589727..1591175 (-) 1449 WP_061065406.1 PilN domain-containing protein -
  AL538_RS08160 (AL538_07555) csrD 1591187..1593196 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  AL538_RS08165 (AL538_07560) ssb 1593448..1593987 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  AL538_RS08170 (AL538_07565) qstR 1594282..1594926 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL538_RS08175 (AL538_07570) galU 1595088..1595960 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL538_RS08180 (AL538_07575) uvrA 1596098..1598920 (+) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=167780 AL538_RS08165 WP_005444320.1 1593448..1593987(-) (ssb) [Vibrio harveyi strain FDAARGOS_107]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=167780 AL538_RS08165 WP_005444320.1 1593448..1593987(-) (ssb) [Vibrio harveyi strain FDAARGOS_107]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464

Multiple sequence alignment