Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AL538_RS08170 Genome accession   NZ_CP014038
Coordinates   1594282..1594926 (+) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain FDAARGOS_107     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589282..1599926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL538_RS08155 (AL538_07550) - 1589727..1591175 (-) 1449 WP_061065406.1 PilN domain-containing protein -
  AL538_RS08160 (AL538_07555) csrD 1591187..1593196 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  AL538_RS08165 (AL538_07560) ssb 1593448..1593987 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  AL538_RS08170 (AL538_07565) qstR 1594282..1594926 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL538_RS08175 (AL538_07570) galU 1595088..1595960 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL538_RS08180 (AL538_07575) uvrA 1596098..1598920 (+) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=167781 AL538_RS08170 WP_009698824.1 1594282..1594926(+) (qstR) [Vibrio harveyi strain FDAARGOS_107]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=167781 AL538_RS08170 WP_009698824.1 1594282..1594926(+) (qstR) [Vibrio harveyi strain FDAARGOS_107]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACTTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment