Detailed information NTG0167777

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: A4W88_RS01785
• Genome accession: NZ_CP017275
• Coordinates: 372011..373018 (+)
• Length: 335 a.a.
• NCBI ID: WP_011374076.1
• Uniprot ID: Q38YQ9
• Organism: Latilactobacillus sakei strain TMW 1.1398
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 367011..378018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W88_RS01765 (A4W88_01750)	hexB	367897..369855 (+)	1959	WP_076631955.1	DNA mismatch repair endonuclease MutL	Machinery gene
A4W88_RS01770 (A4W88_01755)	-	369855..370400 (+)	546	WP_011374073.1	Maf family protein	-
A4W88_RS01775 (A4W88_01760)	-	370413..370976 (+)	564	WP_011374074.1	TIGR00730 family Rossman fold protein	-
A4W88_RS01780 (A4W88_01765)	ruvA	371387..371998 (+)	612	WP_011374075.1	Holliday junction branch migration protein RuvA	Machinery gene
A4W88_RS01785 (A4W88_01770)	ruvB	372011..373018 (+)	1008	WP_011374076.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
A4W88_RS01790 (A4W88_01775)	queA	373033..374064 (+)	1032	WP_076631957.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
A4W88_RS01795 (A4W88_01780)	-	374091..374612 (+)	522	WP_076631958.1	GNAT family protein	-
A4W88_RS01800 (A4W88_01785)	arcA	374819..376054 (+)	1236	WP_056947797.1	arginine deiminase	-
A4W88_RS01805 (A4W88_01790)	argF	376080..377096 (+)	1017	WP_011374080.1	ornithine carbamoyltransferase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37265.71 Da
• Isoelectric Point: 4.8413

>NTDB_id=167777 A4W88_RS01785 WP_011374076.1 372011..373018(+) (ruvB) [Latilactobacillus sakei strain TMW 1.1398]
MADERIVSAENDDFAEASIEKTLRPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLLYGPPGLGKTTLAMVIANELQ
VQIRTTSGPAIERPGDLVALLNELQPGDVLFIDEIHRLPKMVEELLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGA
TTRAGLLSAPLRDRFGIVEHMAYYTEADLMDIVQRSAGVFNMSIVPDGALEIARRSRGTPRIANRLLKRTRDYAQVADQN
TIDQAIADHALSQLQVDIRGLDGVDRKILQMMIDYYQGGPVGLKTIAANIGEENETIEEVYEPYLLQIGFLKRTQRGRMV
TPAGYAHLGMPYPEK

Nucleotide

• Length: 1008 bp

>NTDB_id=167777 A4W88_RS01785 WP_011374076.1 372011..373018(+) (ruvB) [Latilactobacillus sakei strain TMW 1.1398]
ATGGCAGATGAGCGAATTGTTTCAGCCGAAAACGATGATTTTGCTGAAGCAAGCATTGAAAAAACATTGCGGCCACAAGT
CCTTGCACAATATATCGGTCAAGATCGGGTTAAAAATGAATTAGCGGTCTATATTGAAGCGGCCAAAAAACGGGAAGAGT
CCCTCGATCACGTTTTACTTTATGGCCCACCAGGTTTGGGGAAAACCACGTTAGCGATGGTGATTGCTAACGAGTTGCAA
GTCCAGATTCGAACGACAAGTGGCCCCGCAATCGAGCGGCCTGGGGATTTAGTGGCGTTATTAAACGAGTTACAACCCGG
GGATGTTTTATTTATTGATGAAATTCATCGCTTACCTAAGATGGTTGAAGAATTACTTTATTCAGCGATGGAAGATTTCT
ACATCGATATTGTGGTTGGTCAAGGGCCCACCGCACATCCCGTCCATTTTCCATTACCACCATTCACATTGATTGGCGCG
ACGACGCGGGCGGGCTTATTGTCTGCGCCATTGCGAGATCGTTTCGGAATTGTGGAACACATGGCTTACTACACGGAAGC
TGATTTGATGGACATTGTGCAACGCTCAGCCGGCGTCTTTAACATGTCGATTGTGCCAGATGGCGCGTTAGAAATCGCAC
GTCGCTCGCGAGGGACGCCGCGGATTGCCAATCGGTTGTTGAAACGAACTCGAGATTACGCACAAGTGGCTGACCAAAAT
ACGATTGATCAGGCGATTGCTGATCACGCATTAAGTCAGCTGCAAGTTGATATTCGGGGCTTAGACGGTGTCGATCGCAA
AATCCTCCAGATGATGATTGATTATTATCAAGGCGGACCAGTCGGTTTAAAAACCATTGCCGCCAATATTGGTGAAGAAA
ACGAAACAATTGAAGAAGTTTACGAGCCTTATTTACTGCAAATTGGCTTTTTAAAACGAACGCAAAGAGGCCGGATGGTA
ACGCCGGCTGGTTATGCCCATTTAGGCATGCCTTATCCAGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (260-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

3D structure

• AlphaFold DB: Q38YQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	64.653	98.806	0.639
ruvB	Streptococcus pneumoniae R6	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae D39	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae TIGR4	64.375	95.522	0.615
ruvB	Synechocystis sp. PCC 6803	58.28	93.731	0.546
ruvB	Helicobacter pylori 26695	51.829	97.91	0.507