Detailed information NTG0167776

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL538_RS07280
• Genome accession: NZ_CP014038
• Coordinates: 1429697..1430680 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain FDAARGOS_107
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1424697..1435680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL538_RS07265 (AL538_06690)	recA	1425229..1426272 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
AL538_RS07270 (AL538_06695)	pncC	1426474..1426956 (-)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
AL538_RS07275 (AL538_06700)	mutS	1427042..1429603 (+)	2562	WP_047512941.1	DNA mismatch repair protein MutS	-
AL538_RS07280 (AL538_06705)	rpoS	1429697..1430680 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
AL538_RS07285 (AL538_06710)	-	1430761..1431684 (-)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
AL538_RS07290 (AL538_06715)	-	1431699..1432325 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL538_RS07295 (AL538_06720)	surE	1432325..1433101 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
AL538_RS07300 (AL538_06725)	truD	1433101..1434144 (-)	1044	WP_061065384.1	tRNA pseudouridine(13) synthase TruD	-
AL538_RS07305 (AL538_06730)	ispF	1434190..1434666 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL538_RS07310 (AL538_06735)	ispD	1434681..1435391 (-)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL538_RS07315 (AL538_06740)	ftsB	1435393..1435674 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=167776 AL538_RS07280 WP_005452115.1 1429697..1430680(-) (rpoS) [Vibrio harveyi strain FDAARGOS_107]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=167776 AL538_RS07280 WP_005452115.1 1429697..1430680(-) (rpoS) [Vibrio harveyi strain FDAARGOS_107]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856