Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | A4W88_RS01780 | Genome accession | NZ_CP017275 |
| Coordinates | 371387..371998 (+) | Length | 203 a.a. |
| NCBI ID | WP_011374075.1 | Uniprot ID | Q38YR0 |
| Organism | Latilactobacillus sakei strain TMW 1.1398 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 366387..376998
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W88_RS01765 (A4W88_01750) | hexB | 367897..369855 (+) | 1959 | WP_076631955.1 | DNA mismatch repair endonuclease MutL | Machinery gene |
| A4W88_RS01770 (A4W88_01755) | - | 369855..370400 (+) | 546 | WP_011374073.1 | Maf family protein | - |
| A4W88_RS01775 (A4W88_01760) | - | 370413..370976 (+) | 564 | WP_011374074.1 | TIGR00730 family Rossman fold protein | - |
| A4W88_RS01780 (A4W88_01765) | ruvA | 371387..371998 (+) | 612 | WP_011374075.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| A4W88_RS01785 (A4W88_01770) | ruvB | 372011..373018 (+) | 1008 | WP_011374076.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| A4W88_RS01790 (A4W88_01775) | queA | 373033..374064 (+) | 1032 | WP_076631957.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| A4W88_RS01795 (A4W88_01780) | - | 374091..374612 (+) | 522 | WP_076631958.1 | GNAT family protein | - |
| A4W88_RS01800 (A4W88_01785) | arcA | 374819..376054 (+) | 1236 | WP_056947797.1 | arginine deiminase | - |
Sequence
Protein
Download Length: 203 a.a. Molecular weight: 22143.35 Da Isoelectric Point: 4.8129
>NTDB_id=167776 A4W88_RS01780 WP_011374075.1 371387..371998(+) (ruvA) [Latilactobacillus sakei strain TMW 1.1398]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIFVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIFVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK
Nucleotide
Download Length: 612 bp
>NTDB_id=167776 A4W88_RS01780 WP_011374075.1 371387..371998(+) (ruvA) [Latilactobacillus sakei strain TMW 1.1398]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTGCAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTTTGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGCTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTTGGGAAGAAGACGGCCCAACAGATTGCCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGATGCA
CTAGCGGCCTTGAGTGCGCTTGGTTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTGCAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTTTGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGCTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTTGGGAAGAAGACGGCCCAACAGATTGCCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGATGCA
CTAGCGGCCTTGAGTGCGCTTGGTTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Streptococcus pneumoniae TIGR4 |
48.293 |
100 |
0.488 |
| ruvA | Streptococcus pneumoniae R6 |
48.293 |
100 |
0.488 |
| ruvA | Streptococcus pneumoniae D39 |
48.293 |
100 |
0.488 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
46.078 |
100 |
0.463 |