Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL537_RS04450 Genome accession   NZ_CP014036
Coordinates   892888..894411 (-) Length   507 a.a.
NCBI ID   WP_006742918.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887888..899411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS04430 (AL537_04430) - 889176..890162 (+) 987 WP_074190074.1 serine/threonine protein kinase -
  AL537_RS04435 (AL537_04435) - 890197..890799 (+) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  AL537_RS04440 (AL537_04440) - 890846..891724 (-) 879 WP_104971089.1 acyltransferase -
  AL537_RS04445 (AL537_04445) - 891874..892830 (+) 957 WP_104971090.1 DUF2860 domain-containing protein -
  AL537_RS04450 (AL537_04450) comM 892888..894411 (-) 1524 WP_006742918.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL537_RS04455 (AL537_04455) ilvG 894876..896522 (+) 1647 WP_104971091.1 acetolactate synthase 2 catalytic subunit -
  AL537_RS04460 (AL537_04460) ilvM 896534..896818 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  AL537_RS04465 (AL537_04465) ilvE 896831..897769 (+) 939 WP_005378953.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55047.16 Da        Isoelectric Point: 8.7823

>NTDB_id=167741 AL537_RS04450 WP_006742918.1 892888..894411(-) (comM) [Vibrio diabolicus strain FDAARGOS_105]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKIVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKERVNHARTNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERAHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=167741 AL537_RS04450 WP_006742918.1 892888..894411(-) (comM) [Vibrio diabolicus strain FDAARGOS_105]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATTAGCAA
TGGTATGCCCGGGTTTACCTTGGTAGGGCTACCAGAGACGACGGTAAAAGAGTCCAAAGATCGCGTTCGTAGCGCGATCA
TTAATTCTAATTTTCAGTTTCCAGCTAAGCGGATCACCGTTAATTTAGCTCCAGCAGATTTGCCCAAAGAGGGAGGGCGT
TTTGATCTTCCTATCGCATTGGGGATTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTTAAAAACTACGAATTTGT
TGGCGAGTTAGCGCTATCTGGTGGTCTAAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTAGTGGTCCCACATGTAAATGGCGATCAGGCGGCGCTGGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGTCAACATCGACTGAATCTTTTTCAAACGCCTAAGCGCAAAATAGTCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGCGCATTGGAGATAGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACCATGTTGGCTTCGCGTTTGTGTGACTTACTACCGGAGATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCGTCGCTGACGCAGAGTGAAATTAATGAGCACAATTGGAAGTCGCGTCCGTT
TCGTTCGCCGCATCATTCAAGTTCAATGGCTGCATTAGTTGGCGGTGGCTCGGTACCCAGACCCGGGGAGATCTCTTTAG
CCCACAACGGCTTGTTGTTTCTCGACGAAATGCCCGAATTTGACCGAAAGGTGCTGGACTCGTTACGCGAACCGCTCGAA
TCTGGTGAGATCATTATCTCTCGAGCGCAAGGTAAAACACGCTTTCCGGCTCGCTTCCAATTAGTTGGAGCATTGAACCC
AAGTCCGACAGGATATTACGAAGGCAATCAAGCTCGCACCAATCCACAAGCTATTTTGCGTTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGAACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACCGCTATCGTTAAAGAACGTGTGAATCATGCGCGTACCAATATGTTGAACCGCAGCGGTAAGGTAAATGC
ACTGTTAGGCAGTCGAGAAATCGAGGCGTTTTGCCCCTTACACAAAAGTGATGCGGAGTTTCTTGAAACCGCTTTACATC
GTTTGGGGCTTTCGATTCGCGCGTATCATCGCATTATCAAAGTAGCACGAACGATAGCAGATCTTGATGGGGCGGAGCAG
ATTGAACGAGCGCACTTAGCCGAGGCGCTTGGGTATCGAGCGATGGATCGCTTACTGAAACAACTCACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.675

100

0.947
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment