Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   A4W87_RS07715 Genome accession   NZ_CP017273
Coordinates   1490688..1491689 (-) Length   333 a.a.
NCBI ID   WP_011374124.1    Uniprot ID   Q38YL1
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485688..1496689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS07700 (A4W87_07660) - 1485990..1486901 (+) 912 WP_251932756.1 IS3 family transposase -
  A4W87_RS07705 (A4W87_07665) - 1487094..1487801 (-) 708 WP_011374126.1 glucosamine-6-phosphate deaminase -
  A4W87_RS07710 (A4W87_07670) - 1488085..1490640 (+) 2556 WP_076632518.1 transglycosylase domain-containing protein -
  A4W87_RS07715 (A4W87_07675) ccpA 1490688..1491689 (-) 1002 WP_011374124.1 catabolite control protein A Regulator
  A4W87_RS07720 (A4W87_07680) - 1491906..1493003 (+) 1098 WP_076632520.1 Xaa-Pro peptidase family protein -
  A4W87_RS07725 (A4W87_07685) - 1493415..1493852 (-) 438 WP_011374121.1 YtxH domain-containing protein -
  A4W87_RS07730 (A4W87_07690) - 1493858..1494292 (-) 435 WP_016264674.1 DUF948 domain-containing protein -
  A4W87_RS07740 (A4W87_07705) - 1495755..1496642 (+) 888 WP_011374119.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36359.58 Da        Isoelectric Point: 4.7994

>NTDB_id=167741 A4W87_RS07715 WP_011374124.1 1490688..1491689(-) (ccpA) [Latilactobacillus sakei strain TMW 1.1396]
MEKQTITIYDVAREADVSMATVSRVVNGNPNVKPATRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVIIPDVSDIYFAS
LARGIDDVATMYKYNIILANSDENNQKEVQVLNTLLAKQVDGLIYMGHSISDAIRAEFARSKTPIVLAGSIDPDEQVGSV
NIDYVAAVKDATLKLIKNGNEKVAFICGNLEFPINSKYRLRGYKDALNEAGIPYDESLIFETEYSYSAGEALFGKVQAIG
ATAAVVSDDELAVGVLNAAVDAGVNIPTDFEIVTSNNTKLTEMVRPKMTSISQPLYDMGAVGMRLLTKMMNKEEIDDKTI
LLPYSIVDRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=167741 A4W87_RS07715 WP_011374124.1 1490688..1491689(-) (ccpA) [Latilactobacillus sakei strain TMW 1.1396]
ATGGAAAAACAAACAATTACAATTTACGACGTTGCGCGTGAAGCTGACGTATCAATGGCGACCGTCTCACGGGTTGTTAA
CGGGAACCCCAACGTTAAGCCTGCCACTCGCAAGAAAGTGCTTGAAGTGATCGACCGTTTAGACTATCGTCCTAACGCTG
TTGCTCGTGGTTTGGCAAGTAAGAAAACAACAACTGTTGGGGTTATTATCCCAGACGTTAGTGATATCTACTTTGCTTCA
TTAGCACGCGGAATTGATGATGTTGCCACAATGTACAAGTACAACATCATTTTAGCGAACTCAGATGAAAACAACCAAAA
GGAAGTTCAAGTATTGAATACCTTATTGGCGAAACAAGTAGATGGTTTAATCTACATGGGTCACAGTATCTCAGATGCAA
TCCGTGCTGAATTCGCCCGTTCTAAGACACCAATCGTGTTAGCTGGTTCAATCGATCCAGACGAACAAGTCGGTAGTGTT
AATATTGACTACGTTGCAGCCGTTAAGGACGCAACTTTGAAGTTAATCAAGAACGGTAACGAAAAAGTCGCCTTCATCTG
TGGCAACTTAGAGTTCCCAATCAACAGCAAATATCGTTTACGTGGCTATAAAGATGCTTTGAACGAAGCTGGTATTCCTT
ATGACGAAAGCTTAATTTTCGAAACAGAATACAGTTACAGTGCTGGTGAAGCCTTATTCGGTAAGGTTCAAGCAATTGGC
GCAACTGCTGCTGTTGTCAGTGACGATGAATTAGCCGTAGGTGTTTTAAATGCTGCTGTTGATGCAGGTGTTAATATTCC
AACTGACTTTGAAATTGTGACAAGTAATAACACGAAGTTAACTGAAATGGTTCGTCCTAAGATGACATCAATCTCACAAC
CTTTATATGATATGGGTGCTGTTGGGATGCGTCTGTTAACGAAGATGATGAACAAAGAAGAAATCGATGATAAGACAATC
CTATTGCCATATAGCATTGTTGATCGTCAATCAACTAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

62.31

98.799

0.616
  ccpA Streptococcus gordonii str. Challis substr. CH1

60.486

98.799

0.598
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.456

100

0.565

Multiple sequence alignment