Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AL537_RS02760 | Genome accession | NZ_CP014036 |
| Coordinates | 563383..563976 (-) | Length | 197 a.a. |
| NCBI ID | WP_012841351.1 | Uniprot ID | A0AAE4SAG9 |
| Organism | Vibrio diabolicus strain FDAARGOS_105 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 558383..568976
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL537_RS02740 (AL537_02740) | aroB | 559266..560366 (-) | 1101 | WP_104971007.1 | 3-dehydroquinate synthase | - |
| AL537_RS02745 (AL537_02745) | aroK | 560398..560916 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AL537_RS02750 (AL537_02750) | pilQ | 561104..562852 (-) | 1749 | WP_006742777.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| AL537_RS02755 (AL537_02755) | pilP | 562878..563393 (-) | 516 | WP_005395715.1 | pilus assembly protein PilP | Machinery gene |
| AL537_RS02760 (AL537_02760) | pilO | 563383..563976 (-) | 594 | WP_012841351.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AL537_RS02765 (AL537_02765) | pilN | 563969..564544 (-) | 576 | WP_005395717.1 | PilN domain-containing protein | Machinery gene |
| AL537_RS02770 (AL537_02770) | pilM | 564528..565544 (-) | 1017 | WP_005395718.1 | type IV pilus assembly protein PilM | Machinery gene |
| AL537_RS02775 (AL537_02775) | - | 565688..568249 (+) | 2562 | WP_048626702.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23042.45 Da Isoelectric Point: 4.7906
>NTDB_id=167735 AL537_RS02760 WP_012841351.1 563383..563976(-) (pilO) [Vibrio diabolicus strain FDAARGOS_105]
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=167735 AL537_RS02760 WP_012841351.1 563383..563976(-) (pilO) [Vibrio diabolicus strain FDAARGOS_105]
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTAATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTAGCACTGAAGATCAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAGTTATTACTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACCCGTATCGACTGGGGTGAGAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGAGATTTTCATGACATCGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTAATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTAGCACTGAAGATCAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAGTTATTACTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACCCGTATCGACTGGGGTGAGAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGAGATTTTCATGACATCGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
88.947 |
96.447 |
0.858 |
| pilO | Vibrio cholerae strain A1552 |
70.051 |
100 |
0.701 |