Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AL537_RS02765 Genome accession   NZ_CP014036
Coordinates   563969..564544 (-) Length   191 a.a.
NCBI ID   WP_005395717.1    Uniprot ID   A0AAE4S901
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558969..569544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS02740 (AL537_02740) aroB 559266..560366 (-) 1101 WP_104971007.1 3-dehydroquinate synthase -
  AL537_RS02745 (AL537_02745) aroK 560398..560916 (-) 519 WP_005381319.1 shikimate kinase AroK -
  AL537_RS02750 (AL537_02750) pilQ 561104..562852 (-) 1749 WP_006742777.1 type IV pilus secretin PilQ family protein Machinery gene
  AL537_RS02755 (AL537_02755) pilP 562878..563393 (-) 516 WP_005395715.1 pilus assembly protein PilP Machinery gene
  AL537_RS02760 (AL537_02760) pilO 563383..563976 (-) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL537_RS02765 (AL537_02765) pilN 563969..564544 (-) 576 WP_005395717.1 PilN domain-containing protein Machinery gene
  AL537_RS02770 (AL537_02770) pilM 564528..565544 (-) 1017 WP_005395718.1 type IV pilus assembly protein PilM Machinery gene
  AL537_RS02775 (AL537_02775) - 565688..568249 (+) 2562 WP_048626702.1 PBP1A family penicillin-binding protein -
  AL537_RS02780 (AL537_02780) oxyR 568301..569212 (-) 912 WP_005395720.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22325.80 Da        Isoelectric Point: 7.0774

>NTDB_id=167736 AL537_RS02765 WP_005395717.1 563969..564544(-) (pilN) [Vibrio diabolicus strain FDAARGOS_105]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKAEAQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=167736 AL537_RS02765 WP_005395717.1 563969..564544(-) (pilN) [Vibrio diabolicus strain FDAARGOS_105]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGGTCGC
GTTAGGCATGTTGGTCGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCGGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAGAAAGCGGA
GGCCCAGCATGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.246

100

0.832
  pilN Vibrio cholerae strain A1552

60.106

98.429

0.592

Multiple sequence alignment