Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AL537_RS02755 Genome accession   NZ_CP014036
Coordinates   562878..563393 (-) Length   171 a.a.
NCBI ID   WP_005395715.1    Uniprot ID   A0AAE4S8V9
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557878..568393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS02740 (AL537_02740) aroB 559266..560366 (-) 1101 WP_104971007.1 3-dehydroquinate synthase -
  AL537_RS02745 (AL537_02745) aroK 560398..560916 (-) 519 WP_005381319.1 shikimate kinase AroK -
  AL537_RS02750 (AL537_02750) pilQ 561104..562852 (-) 1749 WP_006742777.1 type IV pilus secretin PilQ family protein Machinery gene
  AL537_RS02755 (AL537_02755) pilP 562878..563393 (-) 516 WP_005395715.1 pilus assembly protein PilP Machinery gene
  AL537_RS02760 (AL537_02760) pilO 563383..563976 (-) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL537_RS02765 (AL537_02765) pilN 563969..564544 (-) 576 WP_005395717.1 PilN domain-containing protein Machinery gene
  AL537_RS02770 (AL537_02770) pilM 564528..565544 (-) 1017 WP_005395718.1 type IV pilus assembly protein PilM Machinery gene
  AL537_RS02775 (AL537_02775) - 565688..568249 (+) 2562 WP_048626702.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19011.18 Da        Isoelectric Point: 10.5314

>NTDB_id=167734 AL537_RS02755 WP_005395715.1 562878..563393(-) (pilP) [Vibrio diabolicus strain FDAARGOS_105]
MTSKHLLLVLMGSLLLGCQANDESLTDFIRGVESQARRDVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=167734 AL537_RS02755 WP_005395715.1 562878..563393(-) (pilP) [Vibrio diabolicus strain FDAARGOS_105]
ATGACAAGTAAGCATTTGTTACTGGTACTGATGGGGTCTCTGCTACTTGGATGTCAGGCGAATGATGAGTCATTAACGGA
TTTTATTCGAGGGGTGGAGAGTCAGGCGCGTCGAGATGTCGAGAAACTTAAGCCTGCAGATAAGTATGTTGCCGTCACGT
ACGCACCTGAAGTACAGCGAGCGCCCTTTGAGTTACCAAAAGAAGCCACGATCGCCACTCAGCCCGTTGCAAGAAAAGAT
TGCTGGCAACCACCTTCAAGAAGGCGCACTGGCAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGAGTTAT
GGGCATGGGTAATACGGTTTCTGGTCTCGTTCAGGCACCCAACGGCACCGTTTATAAAGTGAAGCCGGGGCAATACCTCG
GACGCAACAATGGCAAAGTGACCCACGTCAGCCATTCCTATTTGTTAATTAATGAAACGTTGCCCGACGGCTTAGGGTGT
TGGCAGAAGCGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

85.38

100

0.854
  pilP Vibrio cholerae strain A1552

56.977

100

0.573

Multiple sequence alignment