Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL537_RS02530 Genome accession   NZ_CP014036
Coordinates   512365..512901 (-) Length   178 a.a.
NCBI ID   WP_012841367.1    Uniprot ID   A0AAE4M8V6
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 507365..517901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS02510 (AL537_02510) - 507684..508016 (-) 333 WP_046873588.1 hypothetical protein -
  AL537_RS02515 (AL537_02515) gspM 508009..508659 (-) 651 WP_104970993.1 type II secretion system protein GspM -
  AL537_RS02520 (AL537_02520) - 508656..510101 (-) 1446 WP_104970994.1 MSHA biogenesis protein MshI -
  AL537_RS02525 (AL537_02525) csrD 510113..512122 (-) 2010 WP_104970995.1 RNase E specificity factor CsrD -
  AL537_RS02530 (AL537_02530) ssb 512365..512901 (-) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  AL537_RS02535 (AL537_02535) qstR 513179..513823 (+) 645 WP_104970996.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL537_RS02540 (AL537_02540) galU 513982..514854 (+) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL537_RS02545 (AL537_02545) uvrA 515004..517826 (+) 2823 WP_104970997.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19791.83 Da        Isoelectric Point: 4.9164

>NTDB_id=167731 AL537_RS02530 WP_012841367.1 512365..512901(-) (ssb) [Vibrio diabolicus strain FDAARGOS_105]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=167731 AL537_RS02530 WP_012841367.1 512365..512901(-) (ssb) [Vibrio diabolicus strain FDAARGOS_105]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGCCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAGCAA
CCACAGCAGCAGTACAATGAACCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.601
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

43.85

100

0.461

Multiple sequence alignment