Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A4W87_RS06285 Genome accession   NZ_CP017273
Coordinates   1241175..1242878 (-) Length   567 a.a.
NCBI ID   WP_056948329.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1236175..1247878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS06260 (A4W87_06220) coaBC 1238194..1239411 (-) 1218 WP_011374396.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A4W87_RS06265 (A4W87_06225) rpoZ 1239500..1239757 (-) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  A4W87_RS06270 (A4W87_06230) gmk 1239762..1240373 (-) 612 WP_076632160.1 guanylate kinase -
  A4W87_RS06275 (A4W87_06235) - 1240446..1240670 (-) 225 WP_076632161.1 PC4/YdbC family ssDNA-binding protein -
  A4W87_RS06280 (A4W87_06240) - 1240793..1241116 (+) 324 WP_056948330.1 hypothetical protein -
  A4W87_RS06285 (A4W87_06245) recN 1241175..1242878 (-) 1704 WP_056948329.1 DNA repair protein RecN Machinery gene
  A4W87_RS06290 (A4W87_06250) argR 1242928..1243380 (-) 453 WP_025015872.1 arginine repressor -
  A4W87_RS06295 (A4W87_06255) - 1243460..1244290 (-) 831 WP_056948327.1 TlyA family RNA methyltransferase -
  A4W87_RS06300 (A4W87_06260) - 1244299..1245171 (-) 873 WP_056948325.1 polyprenyl synthetase family protein -
  A4W87_RS06305 (A4W87_06265) - 1245171..1245401 (-) 231 WP_011374387.1 exodeoxyribonuclease VII small subunit -
  A4W87_RS06310 (A4W87_06270) xseA 1245403..1246752 (-) 1350 WP_056948323.1 exodeoxyribonuclease VII large subunit -
  A4W87_RS06315 (A4W87_06275) folD 1246745..1247599 (-) 855 WP_162256146.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63180.18 Da        Isoelectric Point: 4.7021

>NTDB_id=167732 A4W87_RS06285 WP_056948329.1 1241175..1242878(-) (recN) [Latilactobacillus sakei strain TMW 1.1396]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTSPENATTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTATLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTALASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATEANASELEQQFEQQQAQLLEEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
MVDNQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=167732 A4W87_RS06285 WP_056948329.1 1241175..1242878(-) (recN) [Latilactobacillus sakei strain TMW 1.1396]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACAGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTGCTCGCTGGTGGTCGAGGGTCACAGGATT
TTATCCGAACCGGTGCGAAAAAAGCGACGTTAGAGGGCTTGTTTACATCACCCGAAAACGCCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACACGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
TGTTAATGGCCATCTGGTCAACACTGCGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAGCTTTGGCGAGTGCAAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCATTGAAGAAGAAGCAACAAAACGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCAGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGAATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAA
GAAGGCAACGCGCTAGATCAAATCGCGATTGCGATGAATCAGATGCAAGAAATTGCGGAATTAGATCCTGAATTCAAAAG
AATTGCTGATAATCTACAAACAGGCTATTACACACTGCAAGACAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCACGCTTGGATGAAATTGAACAGCGCTTAGAAACAATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATCTTAGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCAATGCAGGCCACCGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGGAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCTGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCGCTCTACATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ATGGTTGATAATCAGCAATTTATGCGCAGCGGTCGGGATAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTCGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCACAGGCAATCGCCAATAAAATT
AGCGAAATTGCCCAACATTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464

Multiple sequence alignment