Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AL537_RS02535 Genome accession   NZ_CP014036
Coordinates   513179..513823 (+) Length   214 a.a.
NCBI ID   WP_104970996.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 508179..518823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS02520 (AL537_02520) - 508656..510101 (-) 1446 WP_104970994.1 MSHA biogenesis protein MshI -
  AL537_RS02525 (AL537_02525) csrD 510113..512122 (-) 2010 WP_104970995.1 RNase E specificity factor CsrD -
  AL537_RS02530 (AL537_02530) ssb 512365..512901 (-) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  AL537_RS02535 (AL537_02535) qstR 513179..513823 (+) 645 WP_104970996.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL537_RS02540 (AL537_02540) galU 513982..514854 (+) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL537_RS02545 (AL537_02545) uvrA 515004..517826 (+) 2823 WP_104970997.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24555.47 Da        Isoelectric Point: 9.5188

>NTDB_id=167732 AL537_RS02535 WP_104970996.1 513179..513823(+) (qstR) [Vibrio diabolicus strain FDAARGOS_105]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGLFYSEDTLEQIEEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=167732 AL537_RS02535 WP_104970996.1 513179..513823(+) (qstR) [Vibrio diabolicus strain FDAARGOS_105]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAGGTGGCGGCACTCGA
AAAATACATTGATATGAGCATCCCGGTGATTTCGACCGAAGCACTCATGGAAGCTAAGCCACAGCATCGTAATAAAATCC
TACTGATCGACTTCAGTGAACATAAATCACTCGTTCAATCGATCAAAAACTTACCGCTGGTATGGAAGAACTTTGAAACC
GTTGTGTTCAATGTCCCTAAAAGGCTGACCACGGATGAGCTTCTTTCATTTGGTCAACTAAAGGGGCTGTTCTATTCCGA
AGATACGCTAGAGCAAATTGAAGAAGGATTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGTAACGTCATTAATACTCATACTGCCCCAGCTACGGTAGACCTAACCATTCGCGAGCTGCAA
GTACTGCGTTGCTTGCAAGCTGGCGCCTCAAACAGCCAAATGGCCGAGGAATTATTTGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCAGTGAAGAATCGGGTTCAAGCAATCGCTTGGGCAGATCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.327

100

0.953
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment