Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   A4W87_RS03960 Genome accession   NZ_CP017273
Coordinates   773002..774732 (+) Length   576 a.a.
NCBI ID   WP_011374848.1    Uniprot ID   Q38WI2
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 768002..779732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS03920 (A4W87_03875) mgsA 768433..768855 (+) 423 WP_076632236.1 methylglyoxal synthase -
  A4W87_RS03925 (A4W87_03880) - 768940..769635 (+) 696 WP_082267786.1 YoaK family protein -
  A4W87_RS03930 (A4W87_03885) - 769632..769814 (-) 183 WP_076632237.1 hypothetical protein -
  A4W87_RS03935 (A4W87_03890) - 769807..770127 (-) 321 WP_076632238.1 hypothetical protein -
  A4W87_RS03940 (A4W87_03895) - 770148..770804 (-) 657 WP_076981379.1 type II CAAX endopeptidase family protein -
  A4W87_RS03945 (A4W87_03900) - 771005..771205 (+) 201 WP_004270328.1 cold-shock protein -
  A4W87_RS03950 (A4W87_03905) - 771400..772128 (-) 729 WP_076632240.1 ion transporter -
  A4W87_RS03955 (A4W87_03910) - 772334..772978 (+) 645 WP_076632241.1 TetR/AcrR family transcriptional regulator -
  A4W87_RS03960 (A4W87_03915) rcrP 773002..774732 (+) 1731 WP_011374848.1 ABC transporter ATP-binding protein Regulator
  A4W87_RS03965 (A4W87_03920) rcrQ 774732..776609 (+) 1878 WP_011374847.1 ABC transporter ATP-binding protein Regulator
  A4W87_RS03970 (A4W87_03925) - 776707..777717 (+) 1011 WP_076632242.1 serine hydrolase domain-containing protein -
  A4W87_RS03975 (A4W87_03930) manA 777819..778793 (+) 975 WP_011374845.1 mannose-6-phosphate isomerase, class I -
  A4W87_RS03980 (A4W87_03935) - 778867..779511 (+) 645 WP_076632243.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63754.90 Da        Isoelectric Point: 6.4076

>NTDB_id=167706 A4W87_RS03960 WP_011374848.1 773002..774732(+) (rcrP) [Latilactobacillus sakei strain TMW 1.1396]
MIKLAKKRMSGLAVFGAVLFMVIQVVSNLYLPNLTSDIVNNGIAKGDIDYIWQAGFKMLGFSLISILAAICNVYLAAKTS
QGLGQKLRSDIYRKVINFSHDEMDQVGTSSLITRTTNDVVQIQNVAMMFLRMMIMAPIMLIGASFLAYQKNAQLTSIFVV
VLPLMAIFIGVVMYFAVPLFKAMQKKTDRINLVFREGLTGVRVIRAFRRDKFEQERFDDANLDYTQNAKKVYSIMSVMLP
VMTLIMSGTNIAITWMGGHLIADQAMQVGNLLAFMTYAMQILMSFMMLSMVFVFIPRAQASAVRINEVLDLQTPIENPEN
PKSFTDQTVSLAFDNVNFRYQNAEKLALEKIDFQASAGQTVAIIGGTGSGKSTLVNLIPRFYDVEAGQVQVDGLNVKDVT
LHDIHEQVAFVPQKANLFTGTIRENMQYGNPDATDDQIWHALEIAQSKDFVSELDGGLDSHVEQGGGNFSGGQRQRLAIA
RALVKRASVYVFDDSFSALDFKTDALLRKALKEDTEIQKSVVVIVGQRVSTVADADTILVLDEGQMVGKGTHAQLKATNA
TYQEIINSQIREGDEA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=167706 A4W87_RS03960 WP_011374848.1 773002..774732(+) (rcrP) [Latilactobacillus sakei strain TMW 1.1396]
ATGATTAAACTTGCAAAAAAGAGAATGTCGGGCTTAGCCGTTTTCGGTGCTGTCTTATTCATGGTGATTCAAGTTGTCAG
TAACTTGTATCTCCCTAATTTGACGTCTGATATTGTCAATAACGGGATTGCCAAAGGTGATATTGATTATATCTGGCAAG
CCGGCTTTAAAATGCTCGGCTTTTCATTGATCAGTATCCTAGCCGCAATCTGTAACGTTTATTTAGCCGCTAAGACATCA
CAAGGTCTGGGCCAAAAATTACGATCAGATATTTATCGAAAGGTCATCAATTTCTCACACGATGAAATGGACCAAGTGGG
GACCTCTTCACTGATTACACGGACGACCAATGATGTTGTTCAAATTCAAAATGTGGCAATGATGTTTTTACGAATGATGA
TCATGGCCCCTATTATGTTGATTGGTGCCAGCTTCTTGGCTTACCAAAAGAACGCGCAATTAACATCAATCTTCGTCGTT
GTCTTACCATTGATGGCAATCTTTATCGGTGTCGTGATGTACTTTGCCGTACCGCTTTTCAAAGCGATGCAAAAGAAGAC
TGACCGGATTAACTTAGTTTTCCGTGAAGGCTTAACGGGGGTGCGGGTAATCCGTGCATTCCGTCGCGATAAGTTCGAAC
AAGAACGTTTTGACGATGCGAACTTAGATTACACACAAAATGCTAAAAAGGTCTACAGTATCATGTCTGTCATGTTACCT
GTGATGACATTGATTATGAGTGGGACAAATATTGCAATCACTTGGATGGGTGGTCACTTAATTGCTGATCAAGCCATGCA
AGTGGGGAACTTATTAGCCTTCATGACTTATGCCATGCAAATCTTAATGAGTTTCATGATGCTTTCAATGGTTTTCGTCT
TCATTCCACGGGCACAAGCATCAGCCGTTCGGATTAATGAAGTCTTAGATTTACAAACACCAATTGAAAATCCAGAAAAC
CCAAAAAGTTTTACAGATCAAACTGTCAGCTTGGCCTTCGATAATGTTAACTTCCGCTACCAAAATGCAGAAAAATTAGC
CTTAGAGAAGATTGATTTCCAAGCATCTGCTGGTCAAACCGTTGCGATTATCGGGGGGACTGGTTCAGGTAAATCAACCT
TGGTTAACTTGATTCCTCGTTTTTACGACGTTGAAGCTGGCCAAGTCCAAGTTGATGGGTTAAATGTCAAAGATGTGACA
TTGCATGATATTCATGAACAAGTCGCATTTGTACCGCAAAAAGCCAATCTCTTTACAGGGACGATTCGCGAAAATATGCA
ATATGGGAATCCGGATGCAACTGATGATCAGATTTGGCATGCACTTGAAATTGCCCAATCGAAGGATTTCGTTAGCGAAC
TTGATGGTGGCTTAGACAGTCACGTTGAACAAGGTGGCGGTAACTTCTCAGGTGGTCAACGTCAACGATTAGCGATTGCC
CGGGCATTAGTTAAACGCGCATCAGTTTATGTTTTTGATGATTCATTTTCAGCTTTAGATTTCAAGACGGATGCCCTTTT
ACGCAAAGCCTTGAAGGAAGATACTGAAATTCAAAAGAGTGTCGTCGTCATTGTTGGACAACGGGTCTCAACTGTGGCTG
ATGCAGATACAATCTTGGTCTTAGATGAAGGCCAAATGGTTGGTAAAGGCACGCATGCCCAATTAAAGGCAACAAATGCA
ACTTACCAAGAAATTATCAATTCACAAATCAGAGAGGGGGATGAAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(348-495)

ABC transporter transmembrane region (ABC_membrane)

(15-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.376

97.917

0.415

Multiple sequence alignment