Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL536_RS43110 Genome accession   NZ_CP014035
Coordinates   2700841..2702364 (-) Length   507 a.a.
NCBI ID   WP_020430404.1    Uniprot ID   -
Organism   Vibrio fluvialis strain ATCC 33809     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2695841..2707364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS43085 (AL536_20140) - 2696189..2696455 (+) 267 WP_061057046.1 YihD family protein -
  AL536_RS43090 (AL536_20145) ccoG 2696718..2698142 (+) 1425 WP_020332579.1 cytochrome c oxidase accessory protein CcoG -
  AL536_RS43095 (AL536_20150) - 2698187..2699173 (+) 987 WP_061057047.1 serine/threonine protein kinase -
  AL536_RS43100 (AL536_20155) - 2699204..2699803 (+) 600 WP_061057048.1 thiol:disulfide interchange protein DsbA/DsbL -
  AL536_RS43105 (AL536_20160) - 2699844..2700737 (-) 894 WP_061057049.1 acyltransferase -
  AL536_RS43110 (AL536_20165) comM 2700841..2702364 (-) 1524 WP_020430404.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL536_RS43115 (AL536_20170) ilvG 2702848..2704494 (+) 1647 WP_020332584.1 acetolactate synthase 2 catalytic subunit -
  AL536_RS43120 (AL536_20175) ilvM 2704506..2704790 (+) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  AL536_RS43125 (AL536_20180) ilvE 2704802..2705743 (+) 942 WP_020332585.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55092.08 Da        Isoelectric Point: 8.5030

>NTDB_id=167706 AL536_RS43110 WP_020430404.1 2700841..2702364(-) (comM) [Vibrio fluvialis strain ATCC 33809]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDARDASVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCPLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=167706 AL536_RS43110 WP_020430404.1 2700841..2702364(-) (comM) [Vibrio fluvialis strain ATCC 33809]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTTGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGCATTCTGGCTGCCTCGGATCAGATTGCCCGCACCCAATTGAGCGACCACGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTGCCCCATTTCAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTGTGTGCCGATCTGTGTGGTCAACAGACGTTATCGCTGTTTCAAAGTGACGCGCGCGACGCCAGCGTACCGCG
TGAGCGCGACTTGCAGGACATCATTGGTCAGCAGCAAGGCAAGCGGGCGTTGGAGATAGCAGCGGCGGGCAACCACAATC
TGCTGTTTCTCGGCCCGCCGGGCACGGGTAAAACTATGTTGGCCTCGCGTCTGTGCGATCTGCTGCCAGAGATGACTGAG
GCCGAGGCGATGGAGACTGCATCAGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCTGCACTGGTAGGTGGCGGCACTATTCCCCGCCCCGGAGAAATCTCACTTG
CTCACAATGGCCTACTGTTTCTGGATGAAATGCCGGAATTTGAACGCAAAGTGCTCGATTCACTGCGCGAGCCGCTGGAG
TCCGGCGAGATTATTATTTCCCGCGCGCAGGGTAAAACCCGTTTCCCAGCGCGTTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTACGCTATTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATTGAAATTCCGGCATTGCCCAAAGGCACTTTGTCACACGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGCTGGCACGCAGTGGCAAAGTGAATGC
GCTGTTGCAAAGCCGTGAAATCGAAACTTATTGCCCGCTCAGTCAGCCGGATGCGGAATTTCTGGAAAATGCGCTGCACC
GCCTGGGGTTGTCAATCCGGGCCTATCACCGCATCATCAAAGTCGCGCGCACCATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGGGCGCACCTGGCCGAAGCGCTCGGCTATCGCGCTATGGACCGGTTACTCAAACAGCTCACCGCCCAATCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.349

100

0.893
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.803

0.428

Multiple sequence alignment