Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AL536_RS41715 | Genome accession | NZ_CP014035 |
| Coordinates | 2416237..2416767 (-) | Length | 176 a.a. |
| NCBI ID | WP_020332215.1 | Uniprot ID | S7JBV3 |
| Organism | Vibrio fluvialis strain ATCC 33809 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2411237..2421767
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL536_RS41695 (AL536_18790) | - | 2411700..2411978 (-) | 279 | WP_172465299.1 | MSHA biogenesis protein MshK | - |
| AL536_RS41700 (AL536_18795) | - | 2412004..2412654 (-) | 651 | WP_020433242.1 | MSHA biogenesis protein MshJ | - |
| AL536_RS41705 (AL536_18800) | - | 2412651..2414099 (-) | 1449 | WP_061056940.1 | hypothetical protein | - |
| AL536_RS41710 (AL536_18805) | csrD | 2414107..2416101 (-) | 1995 | WP_020433244.1 | RNase E specificity factor CsrD | - |
| AL536_RS41715 (AL536_18810) | ssb | 2416237..2416767 (-) | 531 | WP_020332215.1 | single-stranded DNA-binding protein | Machinery gene |
| AL536_RS41720 (AL536_18815) | qstR | 2417051..2417701 (+) | 651 | WP_024374534.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AL536_RS41725 (AL536_18820) | galU | 2417829..2418698 (+) | 870 | WP_020433248.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AL536_RS41730 (AL536_18825) | uvrA | 2418836..2421658 (+) | 2823 | WP_061056941.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19526.69 Da Isoelectric Point: 5.7626
>NTDB_id=167702 AL536_RS41715 WP_020332215.1 2416237..2416767(-) (ssb) [Vibrio fluvialis strain ATCC 33809]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=167702 AL536_RS41715 WP_020332215.1 2416237..2416767(-) (ssb) [Vibrio fluvialis strain ATCC 33809]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAGC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAGC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
89.385 |
100 |
0.909 |
| ssb | Glaesserella parasuis strain SC1401 |
55.738 |
100 |
0.58 |
| ssb | Neisseria meningitidis MC58 |
46.739 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
46.739 |
100 |
0.489 |