Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   A4W87_RS03295 Genome accession   NZ_CP017273
Coordinates   646654..647268 (-) Length   204 a.a.
NCBI ID   WP_011374972.1    Uniprot ID   Q38W54
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 641654..652268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS03270 (A4W87_03230) - 641699..642025 (-) 327 WP_011374977.1 heavy metal-binding domain-containing protein -
  A4W87_RS03275 (A4W87_03235) - 642042..642407 (-) 366 WP_011374976.1 DUF1304 domain-containing protein -
  A4W87_RS03280 (A4W87_03240) galE 642493..643485 (-) 993 WP_011374975.1 UDP-glucose 4-epimerase GalE -
  A4W87_RS03285 (A4W87_03245) recJ 643630..645942 (+) 2313 WP_076632066.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A4W87_RS03290 (A4W87_03250) - 645966..646484 (+) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  A4W87_RS03295 (A4W87_03255) dinR/lexA 646654..647268 (-) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  A4W87_RS03300 (A4W87_03260) - 647403..647645 (+) 243 WP_016265356.1 DUF896 domain-containing protein -
  A4W87_RS03305 (A4W87_03265) - 647726..647956 (+) 231 WP_011374970.1 YneF family protein -
  A4W87_RS03310 (A4W87_03270) - 648098..649843 (+) 1746 WP_056947092.1 ABC transporter transmembrane domain-containing protein -
  A4W87_RS03315 (A4W87_03275) - 649845..651635 (+) 1791 WP_016265354.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.96 Da        Isoelectric Point: 4.9705

>NTDB_id=167702 A4W87_RS03295 WP_011374972.1 646654..647268(-) (dinR/lexA) [Latilactobacillus sakei strain TMW 1.1396]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTPAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=167702 A4W87_RS03295 WP_011374972.1 646654..647268(-) (dinR/lexA) [Latilactobacillus sakei strain TMW 1.1396]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTACCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAACCACGGGCGATCGAGTTAACGCCCGCTGGCCTAACGGCAATTGGGGCAACACCC
CAGAAAATCCCAGTATTAGGGGTGGTTACCGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACCGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAATGCCGGTATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGGAAGGTCGTTGGCCTTTACCGCGATCGCATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(3-65)

Peptidase S24-like (Peptidase_S24)

(84-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593

Multiple sequence alignment