Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AL536_RS41720 Genome accession   NZ_CP014035
Coordinates   2417051..2417701 (+) Length   216 a.a.
NCBI ID   WP_024374534.1    Uniprot ID   -
Organism   Vibrio fluvialis strain ATCC 33809     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2412051..2422701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS41705 (AL536_18800) - 2412651..2414099 (-) 1449 WP_061056940.1 hypothetical protein -
  AL536_RS41710 (AL536_18805) csrD 2414107..2416101 (-) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  AL536_RS41715 (AL536_18810) ssb 2416237..2416767 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  AL536_RS41720 (AL536_18815) qstR 2417051..2417701 (+) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL536_RS41725 (AL536_18820) galU 2417829..2418698 (+) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL536_RS41730 (AL536_18825) uvrA 2418836..2421658 (+) 2823 WP_061056941.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24879.67 Da        Isoelectric Point: 9.2330

>NTDB_id=167703 AL536_RS41720 WP_024374534.1 2417051..2417701(+) (qstR) [Vibrio fluvialis strain ATCC 33809]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=167703 AL536_RS41720 WP_024374534.1 2417051..2417701(+) (qstR) [Vibrio fluvialis strain ATCC 33809]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCTCAAATCGAACCGGAGCAGTTGCTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTTGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAATTGGTTGCCTCGTCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGAGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment