Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL475_RS15140 Genome accession   NZ_CP014033
Coordinates   1508376..1509899 (-) Length   507 a.a.
NCBI ID   WP_104966326.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1503376..1514899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS15115 (AL475_07155) - 1503726..1503992 (+) 267 WP_032081791.1 DUF1040 family protein -
  AL475_RS15120 (AL475_07160) ccoG 1504254..1505678 (+) 1425 WP_020332579.1 cytochrome c oxidase accessory protein CcoG -
  AL475_RS15125 (AL475_07165) - 1505723..1506709 (+) 987 WP_104966325.1 serine/threonine protein kinase -
  AL475_RS15130 (AL475_07170) - 1506740..1507339 (+) 600 WP_032082180.1 thiol:disulfide interchange protein DsbA/DsbL -
  AL475_RS15135 (AL475_07175) - 1507379..1508272 (-) 894 WP_020332582.1 acyltransferase -
  AL475_RS15140 (AL475_07180) comM 1508376..1509899 (-) 1524 WP_104966326.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL475_RS15145 (AL475_07185) ilvG 1510383..1512029 (+) 1647 WP_104966327.1 acetolactate synthase 2 catalytic subunit -
  AL475_RS15150 (AL475_07190) ilvM 1512041..1512325 (+) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  AL475_RS15155 (AL475_07195) ilvE 1512337..1513278 (+) 942 WP_020332585.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55024.00 Da        Isoelectric Point: 8.8018

>NTDB_id=167651 AL475_RS15140 WP_104966326.1 1508376..1509899(-) (comM) [Vibrio fluvialis strain FDAARGOS_100]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASGQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDARDASVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTD
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCTLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=167651 AL475_RS15140 WP_104966326.1 1508376..1509899(-) (comM) [Vibrio fluvialis strain FDAARGOS_100]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTCGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGCATTCTGGCTGCCTCGGGTCAGATTGCCCGCACCCAATTGAGCGACCATGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTGCCCCATTTCAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTGTGTGCCGATCTGTGTGGTCAACAGACGTTATCGCTGTTTCAAAGTGACGCGCGCGACGCCAGCGTACCGCG
TGAGCGCGACTTGCAGGACATCATTGGTCAGCAGCAGGGCAAGCGGGCGTTGGAGATCGCAGCGGCGGGCAACCACAACC
TGCTCTTTCTCGGTCCGCCGGGCACGGGTAAAACTATGTTGGCCTCGCGTCTGTGCGATCTGCTGCCAGAGATGACCGAT
GCCGAGGCGATGGAGACCGCATCGGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCCGCGCTGGTAGGTGGCGGCACCATTCCTCGCCCAGGAGAAATCTCGCTCG
CTCACAATGGCCTGCTGTTTCTGGATGAAATGCCGGAGTTTGAACGCAAAGTGCTCGATTCGCTGCGCGAGCCGCTGGAG
TCGGGCGAGATTATTATTTCCCGTGCGCAGGGTAAAACCCGTTTTCCGGCGCGTTTTCAATTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTACGCTATTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATTGAAATTCCGGCGTTGCCCAAAGGTACTTTGTCGCATGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGTTGGCACGCAGTGGCAAAGTGAATGC
GCTGTTGCAAAGCCGTGAAATTGAAACTTACTGTACGCTCAGTCAGCCGGATGCGGAGTTTCTGGAAAATGCGCTGCACC
GCCTAGGGCTGTCAATCCGGGCCTATCACCGCATCATCAAAGTCGCGCGCACCATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGTGCGCACCTCGCCGAAGCGCTCGGGTATCGCGCTATGGATCGGTTACTCAAACAGCTCACCGCCCAGTCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.152

100

0.892
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.803

0.43

Multiple sequence alignment