Detailed information NTG0167647

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A4W86_RS05590
• Genome accession: NZ_CP017272
• Coordinates: 1118526..1121120 (-)
• Length: 864 a.a.
• NCBI ID: WP_025015748.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.1239
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1113526..1126120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W86_RS05565	-	1114335..1114511 (+)	177	WP_011374737.1	YjzD family protein	-
A4W86_RS05570 (A4W86_05530)	-	1114561..1115436 (-)	876	WP_016265192.1	hypothetical protein	-
A4W86_RS05575 (A4W86_05535)	yjeM	1115586..1117118 (-)	1533	WP_011374739.1	glutamate/gamma-aminobutyrate family transporter YjeM	-
A4W86_RS05580 (A4W86_05540)	-	1117316..1117870 (-)	555	WP_035145844.1	DUF1836 domain-containing protein	-
A4W86_RS05585 (A4W86_05545)	rpmF	1117977..1118159 (-)	183	WP_004270395.1	50S ribosomal protein L32	-
A4W86_RS05590 (A4W86_05550)	clpC	1118526..1121120 (-)	2595	WP_025015748.1	ATP-dependent chaperone ClpB	Regulator
A4W86_RS05595 (A4W86_05555)	-	1121296..1121694 (-)	399	WP_051524255.1	LapA family protein	-
A4W86_RS05600 (A4W86_05560)	-	1121703..1122512 (-)	810	WP_035145845.1	SDR family oxidoreductase	-
A4W86_RS05605 (A4W86_05565)	rnz	1122518..1123456 (-)	939	WP_011374744.1	ribonuclease Z	-
A4W86_RS05610 (A4W86_05570)	-	1123491..1125419 (-)	1929	WP_251950488.1	acyltransferase family protein	-

Sequence

Protein

• Length: 864 a.a.
• Molecular weight: 96955.04 Da
• Isoelectric Point: 4.7035

>NTDB_id=167647 A4W86_RS05590 WP_025015748.1 1118526..1121120(-) (clpC) [Latilactobacillus sakei strain TMW 1.1239]
MNPEQMTQAVQDAIAEAQNIAKTRHQTEIDVPHLFKYLIQPQQLGRQIYQEAGIDLTALESEIDREIDTIPTVEGQTNYG
QNISQNLYQVLNAAQTYMQEFQDEFLSTETVILGLMKSKYNPLVQFLQKNNVTTKQLKDIITKLRGGERVTSKNQEDNYQ
ALEKYGTDLVKAVREGKMDPVIGRDEEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPDNLKDKTIVS
LDMGSLIAGAKYRGEFEERLKAVLKEVKKSEGRILVFIDEIHTIVGAGKTEGSMDAGNLLKPMLARGELHMIGATTLDEY
RQNIEKDKALERRFQKVLIQEPTVEDTISILRGLKERFEIFHGVRIHDNALVAAATLSNRYITDRFLPDKAIDLVDEASA
NINVEMNSQPTELDQATRQLMQLEIEEAALKNETDAASQKRLAETQKQLADLRETTNSLKMRWETEKADLNKINDKKEEL
DQAKRQLEDAQSNYDLETAAKLQHATIPQLEQDLADLEKAEKPEDWMVQESVTENEIATVVSSQTGIPVAKLVAGDRQKL
LQLADHLHERVIGQDQAVDAVTDAVLRARAGLQDPNRPLGSFLFLGPTGVGKTELAKALAEDLFDSERHMVRIDMSEYME
KYSVSRLVGAAPGYVGYEEGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSQGRTIDFKNTIIIMTSN
LGSEILLDGVDDQGQISKEAANSVQALIQTKFKPEFLNRIDDTIMFTPLSLQDVEQIVVKMLADLSHRLADQEITLTISE
DAKLWVAKEGYDPAFGARPLRRYITNRIETPLAKEIIAGNVLPNTTVEIGLKDNQLVFENKATD

Nucleotide

• Length: 2595 bp

>NTDB_id=167647 A4W86_RS05590 WP_025015748.1 1118526..1121120(-) (clpC) [Latilactobacillus sakei strain TMW 1.1239]
ATGAATCCAGAACAAATGACACAAGCTGTTCAAGATGCAATTGCAGAAGCACAAAATATTGCAAAAACGCGTCATCAAAC
AGAAATCGATGTCCCACATTTATTTAAATATTTAATTCAACCCCAACAACTGGGTCGGCAAATCTATCAGGAAGCGGGAA
TTGATTTAACCGCACTTGAAAGTGAAATTGATCGCGAGATTGATACGATTCCAACAGTTGAAGGTCAAACAAACTATGGT
CAAAATATTTCACAAAATCTCTATCAAGTTTTGAACGCGGCTCAAACTTACATGCAAGAGTTTCAAGATGAATTTTTATC
AACTGAAACGGTTATTTTAGGGTTGATGAAGTCTAAATACAATCCGTTAGTACAATTTTTACAAAAAAATAACGTCACGA
CTAAACAATTAAAAGATATTATTACCAAATTAAGAGGAGGCGAGCGTGTGACATCTAAAAACCAAGAAGATAACTACCAA
GCGCTTGAAAAATATGGCACTGATTTAGTGAAAGCTGTTCGTGAAGGTAAGATGGATCCCGTCATTGGTCGGGACGAAGA
AATTAGAAACGTCATCCGGATTCTTTCTAGAAAGACCAAGAATAACCCAGTTTTAATCGGCGAACCCGGTGTTGGTAAAA
CAGCGATTGTTGAAGGCTTAGCCCAACGAATCGTTAGAAAAGACGTTCCTGATAACTTAAAGGATAAAACCATCGTCTCA
CTTGATATGGGGAGCTTAATTGCGGGTGCCAAATATCGTGGTGAGTTTGAAGAACGACTAAAGGCGGTCTTAAAAGAAGT
TAAGAAGAGTGAAGGTCGGATTTTAGTTTTCATCGACGAAATTCACACAATCGTTGGTGCTGGGAAGACTGAAGGCAGCA
TGGACGCCGGTAATCTTTTGAAACCGATGTTAGCGCGTGGCGAATTACACATGATTGGCGCGACAACGCTTGACGAATAT
CGTCAAAACATTGAAAAAGATAAAGCCCTCGAAAGACGATTCCAAAAAGTGTTAATTCAAGAACCAACCGTTGAAGATAC
GATTAGTATTTTGCGGGGTTTAAAGGAACGTTTTGAAATTTTCCACGGTGTTCGTATCCATGATAATGCCCTAGTGGCGG
CTGCAACGTTATCTAACCGCTACATCACAGATCGCTTCTTACCTGATAAGGCAATCGATTTAGTCGATGAAGCGAGTGCT
AATATCAACGTTGAAATGAATTCGCAACCTACTGAGCTTGATCAAGCAACGCGGCAATTAATGCAATTGGAAATTGAAGA
AGCGGCATTGAAGAATGAAACGGATGCGGCTTCACAAAAACGGTTAGCCGAAACGCAAAAACAATTAGCAGATTTACGGG
AAACGACGAATAGCTTGAAGATGCGTTGGGAAACCGAAAAGGCTGATTTGAACAAGATTAACGACAAAAAGGAAGAATTA
GACCAAGCAAAACGGCAATTAGAAGATGCCCAAAGTAACTACGATTTGGAAACAGCTGCTAAATTGCAACACGCCACCAT
TCCGCAATTGGAACAAGATCTTGCTGACCTTGAAAAGGCTGAAAAACCAGAGGATTGGATGGTTCAAGAATCAGTTACCG
AAAACGAAATTGCAACAGTTGTTAGTTCGCAAACTGGGATTCCAGTCGCTAAATTAGTAGCAGGTGATCGGCAAAAACTA
TTACAATTAGCTGATCATTTACACGAACGGGTAATTGGTCAAGACCAAGCTGTTGATGCGGTCACAGATGCCGTTTTAAG
AGCGCGTGCTGGCTTGCAAGACCCTAATAGACCTTTAGGCTCATTCTTGTTCTTAGGCCCTACTGGGGTTGGTAAAACGG
AATTAGCTAAAGCTTTAGCTGAAGACCTCTTCGATTCTGAGCGACACATGGTCCGAATCGATATGAGTGAATACATGGAG
AAATACTCAGTATCACGACTTGTTGGTGCGGCACCTGGTTATGTCGGTTATGAAGAAGGCGGTCAATTAACGGAAGCTGT
TCGTCGTAATCCATATACAATTGTCTTGTTAGATGAAATTGAAAAGGCCCATCCAGATGTCTTCAATATCCTTTTACAAG
TCTTAGATGATGGTCGTTTAACCGACTCACAAGGGCGTACAATCGACTTTAAGAACACAATTATCATCATGACCTCTAAC
CTGGGTTCTGAAATCCTCTTGGATGGTGTTGATGATCAAGGTCAAATTTCAAAAGAAGCAGCTAATAGTGTTCAAGCCTT
GATTCAAACGAAATTCAAACCGGAATTCTTGAACCGAATTGATGATACGATTATGTTTACGCCATTGAGCTTGCAAGATG
TCGAACAAATTGTAGTTAAAATGTTGGCTGATTTATCACATCGTTTAGCAGATCAAGAAATCACATTGACGATTTCTGAA
GACGCTAAGTTATGGGTCGCTAAAGAAGGTTATGATCCAGCGTTCGGGGCACGACCATTACGGCGTTATATTACAAATCG
GATTGAAACACCGTTGGCCAAAGAAATTATTGCCGGAAACGTTTTACCTAACACAACAGTTGAAATTGGTCTAAAAGATA
ATCAATTAGTATTTGAAAACAAAGCAACTGACTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (343-445)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (769-849)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-67)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-146)

• AAA domain (Cdc48 subfamily) (AAA_2) (597-762)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	42.105	100	0.426
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.045	91.667	0.385
clpC	Lactococcus lactis subsp. cremoris KW2	42.161	87.847	0.37
clpE	Streptococcus mutans UA159	47.251	77.894	0.368