Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AL475_RS13780 | Genome accession | NZ_CP014033 |
| Coordinates | 1230337..1230867 (-) | Length | 176 a.a. |
| NCBI ID | WP_020332215.1 | Uniprot ID | S7JBV3 |
| Organism | Vibrio fluvialis strain FDAARGOS_100 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1225337..1235867
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL475_RS13760 (AL475_05800) | - | 1225800..1226078 (-) | 279 | WP_180937217.1 | MSHA biogenesis protein MshK | - |
| AL475_RS13765 (AL475_05805) | - | 1226104..1226754 (-) | 651 | WP_104966212.1 | MSHA biogenesis protein MshJ | - |
| AL475_RS13770 (AL475_05810) | - | 1226751..1228199 (-) | 1449 | WP_104966213.1 | MSHA biogenesis protein MshI | - |
| AL475_RS13775 (AL475_05815) | csrD | 1228207..1230201 (-) | 1995 | WP_044364106.1 | RNase E specificity factor CsrD | - |
| AL475_RS13780 (AL475_05820) | ssb | 1230337..1230867 (-) | 531 | WP_020332215.1 | single-stranded DNA-binding protein | Machinery gene |
| AL475_RS13785 (AL475_05825) | qstR | 1231151..1231801 (+) | 651 | WP_104966214.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AL475_RS13790 (AL475_05830) | galU | 1231929..1232798 (+) | 870 | WP_104966215.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AL475_RS13795 (AL475_05835) | uvrA | 1232936..1235758 (+) | 2823 | WP_044364108.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19526.69 Da Isoelectric Point: 5.7626
>NTDB_id=167647 AL475_RS13780 WP_020332215.1 1230337..1230867(-) (ssb) [Vibrio fluvialis strain FDAARGOS_100]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=167647 AL475_RS13780 WP_020332215.1 1230337..1230867(-) (ssb) [Vibrio fluvialis strain FDAARGOS_100]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
89.385 |
100 |
0.909 |
| ssb | Glaesserella parasuis strain SC1401 |
55.738 |
100 |
0.58 |
| ssb | Neisseria meningitidis MC58 |
46.739 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
46.739 |
100 |
0.489 |